{"id":"https://openalex.org/W2114930488","doi":"https://doi.org/10.1155/2010/436036","title":"PROCARB: A Database of Known and Modelled Carbohydrate-Binding Protein Structures with Sequence-Based Prediction Tools","display_name":"PROCARB: A Database of Known and Modelled Carbohydrate-Binding Protein Structures with Sequence-Based Prediction Tools","publication_year":2010,"publication_date":"2010-06-29","ids":{"openalex":"https://openalex.org/W2114930488","doi":"https://doi.org/10.1155/2010/436036","mag":"2114930488","pmid":"https://pubmed.ncbi.nlm.nih.gov/20671979"},"language":"en","primary_location":{"id":"doi:10.1155/2010/436036","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2010/436036","pdf_url":"https://downloads.hindawi.com/archive/2010/436036.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://downloads.hindawi.com/archive/2010/436036.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042243661","display_name":"Adeel Malik","orcid":"https://orcid.org/0000-0002-3453-6001"},"institutions":[{"id":"https://openalex.org/I45294948","display_name":"Post Graduate Institute of Medical Education and Research","ror":"https://ror.org/009nfym65","country_code":"IN","type":"education","lineage":["https://openalex.org/I45294948"]},{"id":"https://openalex.org/I59475050","display_name":"Jamia Millia Islamia","ror":"https://ror.org/00pnhhv55","country_code":"IN","type":"education","lineage":["https://openalex.org/I59475050"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Adeel Malik","raw_affiliation_strings":["Biomedical Informatics Center, PGIMER, Chandigarh 160012, India","Department of Biosciences, Jamia Millia Islamia, New Delhi 110025, India"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Center, PGIMER, Chandigarh 160012, India","institution_ids":["https://openalex.org/I45294948"]},{"raw_affiliation_string":"Department of Biosciences, Jamia Millia Islamia, New Delhi 110025, India","institution_ids":["https://openalex.org/I59475050"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042895656","display_name":"Ahmad Firoz","orcid":"https://orcid.org/0000-0003-3395-8015"},"institutions":[{"id":"https://openalex.org/I45294948","display_name":"Post Graduate Institute of Medical Education and Research","ror":"https://ror.org/009nfym65","country_code":"IN","type":"education","lineage":["https://openalex.org/I45294948"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ahmad Firoz","raw_affiliation_strings":["Biomedical Informatics Center, PGIMER, Chandigarh 160012, India"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Center, PGIMER, Chandigarh 160012, India","institution_ids":["https://openalex.org/I45294948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036931186","display_name":"Vivekanand Jha","orcid":"https://orcid.org/0000-0002-8015-9470"},"institutions":[{"id":"https://openalex.org/I45294948","display_name":"Post Graduate Institute of Medical Education and Research","ror":"https://ror.org/009nfym65","country_code":"IN","type":"education","lineage":["https://openalex.org/I45294948"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Vivekanand Jha","raw_affiliation_strings":["Biomedical Informatics Center, PGIMER, Chandigarh 160012, India","Department of Nephrology, PGIMER, Chandigarh 160012, India"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Center, PGIMER, Chandigarh 160012, India","institution_ids":["https://openalex.org/I45294948"]},{"raw_affiliation_string":"Department of Nephrology, PGIMER, Chandigarh 160012, India","institution_ids":["https://openalex.org/I45294948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028328692","display_name":"Shandar Ahmad","orcid":"https://orcid.org/0000-0002-7287-305X"},"institutions":[{"id":"https://openalex.org/I4210086383","display_name":"National Institute of Biomedical Innovation, Health and Nutrition","ror":"https://ror.org/001rkbe13","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210086383"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shandar Ahmad","raw_affiliation_strings":["National Institute of Biomedical Innovation, Department of Biomedical Research, Saito-Asagi, Ibaraki, Osaka 5670085, Japan"],"affiliations":[{"raw_affiliation_string":"National Institute of Biomedical Innovation, Department of Biomedical Research, Saito-Asagi, Ibaraki, Osaka 5670085, Japan","institution_ids":["https://openalex.org/I4210086383"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5042243661"],"corresponding_institution_ids":["https://openalex.org/I45294948","https://openalex.org/I59475050"],"apc_list":null,"apc_paid":null,"fwci":0.8096,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.72102834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2010","issue":null,"first_page":"1","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.8857470750808716},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.7552284002304077},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7451311349868774},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.551002562046051},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.5422014594078064},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.51503586769104},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5047680139541626},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4782756268978119},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4745393991470337},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4469956159591675},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.4254627823829651},{"id":"https://openalex.org/keywords/threading","display_name":"Threading (protein sequence)","score":0.4232461750507355},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3646690845489502},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3351895213127136},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2900499403476715},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22927778959274292},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.08144509792327881}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.8857470750808716},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.7552284002304077},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7451311349868774},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.551002562046051},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.5422014594078064},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.51503586769104},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5047680139541626},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4782756268978119},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4745393991470337},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4469956159591675},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.4254627823829651},{"id":"https://openalex.org/C200307862","wikidata":"https://www.wikidata.org/wiki/Q7797175","display_name":"Threading (protein sequence)","level":3,"score":0.4232461750507355},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3646690845489502},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3351895213127136},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2900499403476715},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22927778959274292},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.08144509792327881},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1155/2010/436036","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2010/436036","pdf_url":"https://downloads.hindawi.com/archive/2010/436036.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20671979","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20671979","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2909730","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2909730","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Adv Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1155/2010/436036","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2010/436036","pdf_url":"https://downloads.hindawi.com/archive/2010/436036.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320720","display_name":"Indian Council of Medical Research","ror":"https://ror.org/0492wrx28"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2114930488.pdf","grobid_xml":"https://content.openalex.org/works/W2114930488.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W172211441","https://openalex.org/W985369086","https://openalex.org/W1444635424","https://openalex.org/W1517863220","https://openalex.org/W1747519124","https://openalex.org/W1964033767","https://openalex.org/W1978562452","https://openalex.org/W1995516688","https://openalex.org/W2003144438","https://openalex.org/W2008708467","https://openalex.org/W2010381820","https://openalex.org/W2029667189","https://openalex.org/W2032534209","https://openalex.org/W2034740945","https://openalex.org/W2036200292","https://openalex.org/W2040787943","https://openalex.org/W2041022838","https://openalex.org/W2047544230","https://openalex.org/W2051628563","https://openalex.org/W2054668663","https://openalex.org/W2055043387","https://openalex.org/W2061640560","https://openalex.org/W2063768466","https://openalex.org/W2085277871","https://openalex.org/W2091418506","https://openalex.org/W2106645410","https://openalex.org/W2127780244","https://openalex.org/W2129253766","https://openalex.org/W2141885858","https://openalex.org/W2142270082","https://openalex.org/W2149480059","https://openalex.org/W2160432987","https://openalex.org/W2161732286","https://openalex.org/W2164412127","https://openalex.org/W2166211977","https://openalex.org/W2166720212","https://openalex.org/W2414209198","https://openalex.org/W2481136151","https://openalex.org/W2488413167","https://openalex.org/W4213149192","https://openalex.org/W4236236547","https://openalex.org/W4252871916","https://openalex.org/W4256395558"],"related_works":["https://openalex.org/W4375844720","https://openalex.org/W2022667872","https://openalex.org/W3132544722","https://openalex.org/W2103435205","https://openalex.org/W3181892255","https://openalex.org/W2926533301","https://openalex.org/W2018564950","https://openalex.org/W2572671678","https://openalex.org/W2087903152","https://openalex.org/W2584773272"],"abstract_inverted_index":{"Understanding":[0],"of":[1,5,43,55,77,79,100,103,117,122,127,137,156],"the":[2,75,162,191],"three-dimensional":[3,101,120,129],"structures":[4,102],"proteins":[6,73],"that":[7],"interact":[8],"with":[9],"carbohydrates":[10],"covalently":[11],"(glycoproteins)":[12],"as":[13,15,50,52],"well":[14,51],"noncovalently":[16],"(protein-carbohydrate":[17],"complexes)":[18],"is":[19,36,85,184,193],"essential":[20],"to":[21,38,140,195],"many":[22],"biological":[23],"processes":[24],"and":[25,32,124,131,153,178,181,199],"plays":[26],"a":[27,40],"significant":[28],"role":[29],"in":[30,74,161,190],"normal":[31],"disease-associated":[33],"functions.":[34],"It":[35],"important":[37],"have":[39],"central":[41],"repository":[42],"knowledge":[44],"available":[45],"about":[46,170],"these":[47],"protein-carbohydrate":[48,104],"complexes":[49,105,157],"preprocessed":[53],"data":[54],"predicted":[56],"structures.":[57],"This":[58],"can":[59,68],"be":[60],"significantly":[61],"enhanced":[62],"by":[63],"tools":[64],"de":[65],"novo":[66],"which":[67],"predict":[69,141],"carbohydrate-binding":[70,142],"sites":[71,143],"for":[72,164],"absence":[76],"structure":[78],"experimentally":[80],"known":[81],"binding":[82],"site.":[83],"PROCARB":[84,97],"an":[86],"open-access":[87],"database":[88,163,192],"comprising":[89],"three":[90],"independently":[91],"working":[92],"components,":[93],"namely,":[94],"(i)":[95],"Core":[96],"module,":[98,115,135],"consisting":[99,116,136],"taken":[106],"from":[107],"Protein":[108],"Data":[109],"Bank":[110],"(PDB),":[111],"(ii)":[112],"Homology":[113],"Models":[114],"manually":[118],"developed":[119],"models":[121],"N-linked":[123],"O-linked":[125],"glycoproteins":[126],"unknown":[128],"structure,":[130,173],"(iii)":[132],"CBS-Pred":[133],"prediction":[134],"web":[138],"servers":[139],"using":[144],"single":[145],"sequence":[146],"or":[147],"server-generated":[148],"PSSM.":[149],"Several":[150],"precomputed":[151],"structural":[152],"functional":[154],"properties":[155],"are":[158],"also":[159],"included":[160],"quick":[165],"analysis.":[166],"In":[167,186],"particular,":[168],"information":[169],"function,":[171],"secondary":[172],"solvent":[174],"accessibility,":[175],"hydrogen":[176],"bonds":[177],"literature":[179],"reference,":[180],"so":[182,200],"forth,":[183],"included.":[185],"addition,":[187],"each":[188],"protein":[189],"mapped":[194],"Uniprot,":[196],"Pfam,":[197],"PDB,":[198],"forth.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
