{"id":"https://openalex.org/W1999852511","doi":"https://doi.org/10.1155/2009/968986","title":"Region\u2010Based PDEs for Cells Counting and Segmentation in 3D+Time Images of Vertebrate Early Embryogenesis","display_name":"Region\u2010Based PDEs for Cells Counting and Segmentation in 3D+Time Images of Vertebrate Early Embryogenesis","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1999852511","doi":"https://doi.org/10.1155/2009/968986","mag":"1999852511","pmid":"https://pubmed.ncbi.nlm.nih.gov/19830251"},"language":"en","primary_location":{"id":"doi:10.1155/2009/968986","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2009/968986","pdf_url":"https://downloads.hindawi.com/journals/ijbi/2009/968986.pdf","source":{"id":"https://openalex.org/S108408918","display_name":"International Journal of Biomedical Imaging","issn_l":"1687-4188","issn":["1687-4188","1687-4196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Biomedical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://downloads.hindawi.com/journals/ijbi/2009/968986.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108384755","display_name":"B Rizzi","orcid":null},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Barbara Rizzi","raw_affiliation_strings":["DEIS, University of Bologna, Via Venezia 52, 47521 Cesena, Italy","[DEIS, University of Bologna, Cesena, Italy]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DEIS, University of Bologna, Via Venezia 52, 47521 Cesena, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"[DEIS, University of Bologna, Cesena, Italy]","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010613775","display_name":"Alessandro Sarti","orcid":"https://orcid.org/0000-0003-4073-6541"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Sarti","raw_affiliation_strings":["DEIS, University of Bologna, Via Risorgimento 2, 40136 Bologna, Italy","DEIS/University of Bologna, Bologna, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DEIS, University of Bologna, Via Risorgimento 2, 40136 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"DEIS/University of Bologna, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":900,"currency":"USD","value_usd":900},"apc_paid":{"value":900,"currency":"USD","value_usd":900},"fwci":1.8968,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.86953333,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2009","issue":"1","first_page":"968986","last_page":"968986"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9679999947547913,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8196409940719604},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6365938186645508},{"id":"https://openalex.org/keywords/zebrafish","display_name":"Zebrafish","score":0.60211181640625},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5453783869743347},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5428190231323242},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5126530528068542},{"id":"https://openalex.org/keywords/scale-space-segmentation","display_name":"Scale-space segmentation","score":0.43990713357925415},{"id":"https://openalex.org/keywords/stage","display_name":"Stage (stratigraphy)","score":0.43307510018348694},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4260937571525574},{"id":"https://openalex.org/keywords/confocal","display_name":"Confocal","score":0.4218378961086273},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3300394117832184},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2658304274082184},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18173271417617798}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8196409940719604},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6365938186645508},{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.60211181640625},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5453783869743347},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5428190231323242},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5126530528068542},{"id":"https://openalex.org/C65885262","wikidata":"https://www.wikidata.org/wiki/Q7429708","display_name":"Scale-space segmentation","level":4,"score":0.43990713357925415},{"id":"https://openalex.org/C146357865","wikidata":"https://www.wikidata.org/wiki/Q1123245","display_name":"Stage (stratigraphy)","level":2,"score":0.43307510018348694},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4260937571525574},{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.4218378961086273},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3300394117832184},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2658304274082184},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18173271417617798},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1155/2009/968986","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2009/968986","pdf_url":"https://downloads.hindawi.com/journals/ijbi/2009/968986.pdf","source":{"id":"https://openalex.org/S108408918","display_name":"International Journal of Biomedical Imaging","issn_l":"1687-4188","issn":["1687-4188","1687-4196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Biomedical Imaging","raw_type":"journal-article"},{"id":"pmid:19830251","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19830251","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of biomedical imaging","raw_type":null},{"id":"pmh:oai:cris.unibo.it:11585/79779","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/79779","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:690aa392577e40839ec5f42cc75bed1d","is_oa":true,"landing_page_url":"https://doaj.org/article/690aa392577e40839ec5f42cc75bed1d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Biomedical Imaging, Vol 2009 (2009)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2760399","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2760399","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int J Biomed Imaging","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1155/2009/968986","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2009/968986","pdf_url":"https://downloads.hindawi.com/journals/ijbi/2009/968986.pdf","source":{"id":"https://openalex.org/S108408918","display_name":"International Journal of Biomedical Imaging","issn_l":"1687-4188","issn":["1687-4188","1687-4196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Biomedical Imaging","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1999852511.pdf","grobid_xml":"https://content.openalex.org/works/W1999852511.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1488664435","https://openalex.org/W1529871791","https://openalex.org/W1989871863","https://openalex.org/W1991113069","https://openalex.org/W2002569088","https://openalex.org/W2013438056","https://openalex.org/W2014415534","https://openalex.org/W2016787456","https://openalex.org/W2031312855","https://openalex.org/W2047167129","https://openalex.org/W2065965297","https://openalex.org/W2100311503","https://openalex.org/W2103315789","https://openalex.org/W2103559027","https://openalex.org/W2107823227","https://openalex.org/W2116040950","https://openalex.org/W2125349610","https://openalex.org/W2132363464","https://openalex.org/W2149184914","https://openalex.org/W2150134853","https://openalex.org/W2160754664","https://openalex.org/W2162245111","https://openalex.org/W2164391318","https://openalex.org/W2165734775","https://openalex.org/W3006964082","https://openalex.org/W3211330693","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2185902295","https://openalex.org/W2103507220","https://openalex.org/W3144569342","https://openalex.org/W2945274617","https://openalex.org/W4313052709","https://openalex.org/W4205800335","https://openalex.org/W2055202857","https://openalex.org/W2022929107","https://openalex.org/W80586315","https://openalex.org/W2758994127"],"abstract_inverted_index":{"This":[0,36],"paper":[1],"is":[2,40,59,110],"devoted":[3],"to":[4,24,42],"the":[5,28,33,49,62,74,120,127,134,137],"segmentation":[6,22,121],"of":[7,30,38,73,84,103,116,124,129],"cell":[8,50],"nuclei":[9,83],"from":[10],"time":[11,54,117],"lapse":[12],"confocal":[13],"microscopy":[14],"images,":[15],"taken":[16],"throughout":[17],"early":[18],"Zebrafish":[19],"embryogenesis.":[20],"The":[21,107],"allows":[23],"identify":[25],"and":[26,55,77,87,90,98,122,136],"quantify":[27],"number":[29,115],"cells":[31,125],"in":[32,53,81],"animal":[34],"model.":[35],"kind":[37],"information":[39],"relevant":[41],"estimate":[43],"important":[44],"biological":[45],"parameters":[46],"such":[47],"as":[48],"proliferation":[51],"rate":[52],"space.":[56],"Our":[57],"approach":[58,109],"based":[60],"on":[61,95,113],"active":[63],"contour":[64],"model":[65,75],"without":[66],"edges.":[67],"We":[68],"compare":[69],"two":[70],"different":[71,85],"formulations":[72],"equation":[76],"evaluate":[78],"their":[79],"performances":[80],"segmenting":[82],"shapes":[86],"sizes.":[88],"Qualitative":[89],"quantitative":[91],"comparisons":[92],"are":[93],"performed":[94],"both":[96],"synthetic":[97],"real":[99],"data,":[100],"by":[101],"means":[102],"suitable":[104],"gold":[105],"standard.":[106],"best":[108],"then":[111],"applied":[112],"a":[114,130],"lapses":[118],"for":[119],"counting":[123],"during":[126],"development":[128],"zebrafish":[131],"embryo":[132],"between":[133],"sphere":[135],"shield":[138],"stage.":[139]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
