{"id":"https://openalex.org/W2145274698","doi":"https://doi.org/10.1155/2009/584603","title":"A Survey of Flow Cytometry Data Analysis Methods","display_name":"A Survey of Flow Cytometry Data Analysis Methods","publication_year":2009,"publication_date":"2009-12-06","ids":{"openalex":"https://openalex.org/W2145274698","doi":"https://doi.org/10.1155/2009/584603","mag":"2145274698","pmid":"https://pubmed.ncbi.nlm.nih.gov/20049163"},"language":"en","primary_location":{"id":"doi:10.1155/2009/584603","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2009/584603","pdf_url":"https://downloads.hindawi.com/archive/2009/584603.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://downloads.hindawi.com/archive/2009/584603.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081990226","display_name":"Ali Bashashati","orcid":"https://orcid.org/0000-0002-4212-7224"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Ali Bashashati","raw_affiliation_strings":["Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC, Canada V5Z 1L3"],"affiliations":[{"raw_affiliation_string":"Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC, Canada V5Z 1L3","institution_ids":["https://openalex.org/I1289530486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035285628","display_name":"Ryan R. Brinkman","orcid":"https://orcid.org/0000-0002-9765-2990"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ryan R. Brinkman","raw_affiliation_strings":["Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC, Canada V5Z 1L3"],"affiliations":[{"raw_affiliation_string":"Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC, Canada V5Z 1L3","institution_ids":["https://openalex.org/I1289530486"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5081990226"],"corresponding_institution_ids":["https://openalex.org/I1289530486"],"apc_list":null,"apc_paid":null,"fwci":2.9657,"has_fulltext":true,"cited_by_count":115,"citation_normalized_percentile":{"value":0.91550996,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"2009","issue":null,"first_page":"1","last_page":"19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9398999810218811,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9261000156402588,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7598965167999268},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6432890295982361},{"id":"https://openalex.org/keywords/limiting","display_name":"Limiting","score":0.5802897810935974},{"id":"https://openalex.org/keywords/flow-cytometry","display_name":"Flow cytometry","score":0.41609442234039307},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4089134931564331},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3352471590042114},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.21116554737091064}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7598965167999268},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6432890295982361},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.5802897810935974},{"id":"https://openalex.org/C553184892","wikidata":"https://www.wikidata.org/wiki/Q1141429","display_name":"Flow cytometry","level":2,"score":0.41609442234039307},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4089134931564331},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3352471590042114},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.21116554737091064},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1155/2009/584603","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2009/584603","pdf_url":"https://downloads.hindawi.com/archive/2009/584603.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20049163","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20049163","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2798157","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2798157","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Adv Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1155/2009/584603","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2009/584603","pdf_url":"https://downloads.hindawi.com/archive/2009/584603.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1144995177","display_name":null,"funder_award_id":"R01 EB008400","funder_id":"https://openalex.org/F4320319965","funder_display_name":"Michael Smith Health Research BC"},{"id":"https://openalex.org/G3240706967","display_name":null,"funder_award_id":"R01 EB008400","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G890700375","display_name":null,"funder_award_id":"R01 EB008400","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320319965","display_name":"Michael Smith Health Research BC","ror":"https://ror.org/020x39229"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2145274698.pdf","grobid_xml":"https://content.openalex.org/works/W2145274698.grobid-xml"},"referenced_works_count":116,"referenced_works":["https://openalex.org/W47983363","https://openalex.org/W129305155","https://openalex.org/W269249036","https://openalex.org/W1498373892","https://openalex.org/W1523493868","https://openalex.org/W1555803004","https://openalex.org/W1569187419","https://openalex.org/W1570501271","https://openalex.org/W1579271636","https://openalex.org/W1632580377","https://openalex.org/W1767380958","https://openalex.org/W1851781208","https://openalex.org/W1870677403","https://openalex.org/W1941148137","https://openalex.org/W1966431158","https://openalex.org/W1968735600","https://openalex.org/W1969039219","https://openalex.org/W1974859193","https://openalex.org/W1976017516","https://openalex.org/W1980501707","https://openalex.org/W1981600092","https://openalex.org/W1983054726","https://openalex.org/W1984404921","https://openalex.org/W1987815398","https://openalex.org/W1989543257","https://openalex.org/W1992672611","https://openalex.org/W1993288858","https://openalex.org/W1997533134","https://openalex.org/W1997895752","https://openalex.org/W2005299356","https://openalex.org/W2008412726","https://openalex.org/W2010286763","https://openalex.org/W2011050943","https://openalex.org/W2011068914","https://openalex.org/W2011832962","https://openalex.org/W2013411371","https://openalex.org/W2015725916","https://openalex.org/W2016043834","https://openalex.org/W2016545294","https://openalex.org/W2016613809","https://openalex.org/W2017123832","https://openalex.org/W2017488699","https://openalex.org/W2018531137","https://openalex.org/W2018694640","https://openalex.org/W2026622344","https://openalex.org/W2027822830","https://openalex.org/W2029923724","https://openalex.org/W2031475466","https://openalex.org/W2035103077","https://openalex.org/W2038482150","https://openalex.org/W2039859431","https://openalex.org/W2040467985","https://openalex.org/W2042829929","https://openalex.org/W2046616652","https://openalex.org/W2047708805","https://openalex.org/W2050532278","https://openalex.org/W2050810024","https://openalex.org/W2051385743","https://openalex.org/W2055581058","https://openalex.org/W2058571584","https://openalex.org/W2060305880","https://openalex.org/W2063984763","https://openalex.org/W2066697497","https://openalex.org/W2067038367","https://openalex.org/W2070325805","https://openalex.org/W2071905202","https://openalex.org/W2076914356","https://openalex.org/W2079534543","https://openalex.org/W2080063528","https://openalex.org/W2081492629","https://openalex.org/W2082503527","https://openalex.org/W2082650841","https://openalex.org/W2084176961","https://openalex.org/W2087432514","https://openalex.org/W2089410874","https://openalex.org/W2095744018","https://openalex.org/W2096003201","https://openalex.org/W2097502947","https://openalex.org/W2102649152","https://openalex.org/W2102734279","https://openalex.org/W2107311662","https://openalex.org/W2107699930","https://openalex.org/W2109820980","https://openalex.org/W2113457868","https://openalex.org/W2118160968","https://openalex.org/W2118522007","https://openalex.org/W2124776405","https://openalex.org/W2129724280","https://openalex.org/W2135346934","https://openalex.org/W2137971377","https://openalex.org/W2138550913","https://openalex.org/W2138745909","https://openalex.org/W2139212933","https://openalex.org/W2144513243","https://openalex.org/W2144953859","https://openalex.org/W2145020348","https://openalex.org/W2148603752","https://openalex.org/W2151982307","https://openalex.org/W2153524211","https://openalex.org/W2153675946","https://openalex.org/W2154685960","https://openalex.org/W2158505334","https://openalex.org/W2160617510","https://openalex.org/W2163874058","https://openalex.org/W2165758113","https://openalex.org/W2166178911","https://openalex.org/W2394670988","https://openalex.org/W2463829916","https://openalex.org/W2738924156","https://openalex.org/W2915007872","https://openalex.org/W3143597911","https://openalex.org/W4230317145","https://openalex.org/W4230806689","https://openalex.org/W4237394987","https://openalex.org/W4244973679","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725"],"abstract_inverted_index":{"Flow":[0],"cytometry":[1],"(FCM)":[2],"is":[3,63,76],"widely":[4],"used":[5],"in":[6,10,19,112,123],"health":[7],"research":[8],"and":[9,22,26,40,54,75,80,119],"treatment":[11,41],"for":[12,83],"a":[13,66,103,113],"variety":[14],"of":[15,24,32,42,47,73,91,109],"tasks,":[16],"such":[17],"as":[18],"the":[20,30,38,45,87,110],"diagnosis":[21],"monitoring":[23],"leukemia":[25],"lymphoma":[27],"patients,":[28],"providing":[29],"counts":[31],"helper-T":[33],"lymphocytes":[34],"needed":[35],"to":[36,106],"monitor":[37],"course":[39],"HIV":[43],"infection,":[44],"evaluation":[46],"peripheral":[48],"blood":[49],"hematopoietic":[50],"stem":[51],"cell":[52],"grafts,":[53],"many":[55],"other":[56],"diseases.":[57],"In":[58],"practice,":[59],"FCM":[60,98,127],"data":[61,99,114,128],"analysis":[62,100,115,129],"performed":[64],"manually,":[65],"process":[67],"that":[68],"requires":[69],"an":[70],"inordinate":[71],"amount":[72],"time":[74],"error-prone,":[77],"nonreproducible,":[78],"nonstandardized,":[79],"not":[81],"open":[82],"re-evaluation,":[84],"making":[85],"it":[86],"most":[88],"limiting":[89],"aspect":[90],"this":[92],"technology.":[93],"This":[94],"paper":[95],"reviews":[96],"state-of-the-art":[97],"approaches":[101],"using":[102],"framework":[104],"introduced":[105],"report":[107],"each":[108],"components":[111],"pipeline.":[116],"Current":[117],"challenges":[118],"possible":[120],"future":[121],"directions":[122],"developing":[124],"fully":[125],"automated":[126],"tools":[130],"are":[131],"also":[132],"outlined.":[133]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":8}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
