{"id":"https://openalex.org/W2160065278","doi":"https://doi.org/10.1155/2009/182689","title":"Network Properties for Ranking Predicted miRNA Targets in Breast Cancer","display_name":"Network Properties for Ranking Predicted miRNA Targets in Breast Cancer","publication_year":2009,"publication_date":"2009-03-07","ids":{"openalex":"https://openalex.org/W2160065278","doi":"https://doi.org/10.1155/2009/182689","mag":"2160065278","pmid":"https://pubmed.ncbi.nlm.nih.gov/20224638"},"language":"en","primary_location":{"id":"doi:10.1155/2009/182689","is_oa":true,"landing_page_url":"http://doi.org/10.1155/2009/182689","pdf_url":"https://downloads.hindawi.com/archive/2009/182689.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://downloads.hindawi.com/archive/2009/182689.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113160897","display_name":"J\u00f6rg Linde","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162077","display_name":"Leibniz-Institut f\u00fcr Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Kn\u00f6ll-Institut (HKI)","ror":"https://ror.org/055s37c97","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210162077"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J\u00f6rg Linde","raw_affiliation_strings":["Leibniz-Institute for Natural Product Research and Infection Biology, Hans-Knoell-Institute, Beutenbergstra\u00dfe 11A, 07745 Jena, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz-Institute for Natural Product Research and Infection Biology, Hans-Knoell-Institute, Beutenbergstra\u00dfe 11A, 07745 Jena, Germany","institution_ids":["https://openalex.org/I4210162077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056458463","display_name":"Bj\u00f6rn Olsson","orcid":"https://orcid.org/0000-0001-6254-4335"},"institutions":[{"id":"https://openalex.org/I205158640","display_name":"University of Sk\u00f6vde","ror":"https://ror.org/051mrsz47","country_code":"SE","type":"education","lineage":["https://openalex.org/I205158640"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn Olsson","raw_affiliation_strings":["School of Life Sciences, Systems Biology Research Centre, University of Sk\u00f6vde, P.O. Box 408, 54128 Sk\u00f6vde, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, Systems Biology Research Centre, University of Sk\u00f6vde, P.O. Box 408, 54128 Sk\u00f6vde, Sweden","institution_ids":["https://openalex.org/I205158640"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038083124","display_name":"Zelmina Lubovac-Pilav","orcid":"https://orcid.org/0000-0001-6427-0315"},"institutions":[{"id":"https://openalex.org/I205158640","display_name":"University of Sk\u00f6vde","ror":"https://ror.org/051mrsz47","country_code":"SE","type":"education","lineage":["https://openalex.org/I205158640"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Zelmina Lubovac","raw_affiliation_strings":["School of Life Sciences, Systems Biology Research Centre, University of Sk\u00f6vde, P.O. Box 408, 54128 Sk\u00f6vde, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, Systems Biology Research Centre, University of Sk\u00f6vde, P.O. Box 408, 54128 Sk\u00f6vde, Sweden","institution_ids":["https://openalex.org/I205158640"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038083124"],"corresponding_institution_ids":["https://openalex.org/I205158640"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.19492472,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"2009","issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7199088931083679},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.6999264359474182},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.620481014251709},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5927685499191284},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.5238397121429443},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4987630844116211},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4630316495895386},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4590758979320526},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37052786350250244},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35189568996429443},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.18440192937850952},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17532795667648315}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7199088931083679},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.6999264359474182},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.620481014251709},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5927685499191284},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.5238397121429443},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4987630844116211},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4630316495895386},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4590758979320526},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37052786350250244},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35189568996429443},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.18440192937850952},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17532795667648315}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1155/2009/182689","is_oa":true,"landing_page_url":"http://doi.org/10.1155/2009/182689","pdf_url":"https://downloads.hindawi.com/archive/2009/182689.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20224638","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20224638","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in bioinformatics","raw_type":null},{"id":"pmh:oai:DiVA.org:his-4314","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:his:diva-4314","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:doaj.org/article:af0c855346cc445f8347f1ba67e9d6c4","is_oa":false,"landing_page_url":"https://doaj.org/article/af0c855346cc445f8347f1ba67e9d6c4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Advances in Bioinformatics, Vol 2009 (2009)","raw_type":"article"},{"id":"pmh:oai:hindawi.com:10.1155/2009/182689","is_oa":true,"landing_page_url":"https://doi.org/10.1155/2009/182689","pdf_url":null,"source":{"id":"https://openalex.org/S4306400340","display_name":"Hindawi Journal of Chemistry (Hindawi)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210126990","host_organization_name":"Hindawi (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210126990"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Research Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2833297","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2833297","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Adv Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1155/2009/182689","is_oa":true,"landing_page_url":"http://doi.org/10.1155/2009/182689","pdf_url":"https://downloads.hindawi.com/archive/2009/182689.pdf","source":{"id":"https://openalex.org/S146125958","display_name":"Advances in Bioinformatics","issn_l":"1687-8027","issn":["1687-8027","1687-8035"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319869","host_organization_name":"Hindawi Publishing Corporation","host_organization_lineage":["https://openalex.org/P4310319869"],"host_organization_lineage_names":["Hindawi Publishing Corporation"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7799999713897705,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2160065278.pdf","grobid_xml":"https://content.openalex.org/works/W2160065278.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1890374229","https://openalex.org/W1972978214","https://openalex.org/W1978270504","https://openalex.org/W2001475320","https://openalex.org/W2006770045","https://openalex.org/W2017199818","https://openalex.org/W2023833090","https://openalex.org/W2037631027","https://openalex.org/W2040191060","https://openalex.org/W2050869737","https://openalex.org/W2056944867","https://openalex.org/W2080866509","https://openalex.org/W2090219560","https://openalex.org/W2112090702","https://openalex.org/W2112947018","https://openalex.org/W2113354827","https://openalex.org/W2135836598","https://openalex.org/W2154085311","https://openalex.org/W2159675211","https://openalex.org/W2163199119","https://openalex.org/W2416011462","https://openalex.org/W2916288174","https://openalex.org/W3216959133"],"related_works":["https://openalex.org/W1557094818","https://openalex.org/W2183246718","https://openalex.org/W2099261052","https://openalex.org/W3209204065","https://openalex.org/W2105707930","https://openalex.org/W1755711892","https://openalex.org/W2737319532","https://openalex.org/W2164205946","https://openalex.org/W2057742104","https://openalex.org/W4283692078"],"abstract_inverted_index":{"MicroRNAs":[0],"control":[1],"the":[2,29,86],"expression":[3],"of":[4,25,32,45,65,72,89,92],"their":[5,39],"target":[6,40,48],"genes":[7,49],"by":[8],"translational":[9],"repression":[10],"and":[11,23,80],"transcriptional":[12],"cleavage.":[13],"They":[14],"are":[15,95],"involved":[16],"in":[17,61],"various":[18],"biological":[19,30,87],"processes":[20],"including":[21],"development":[22],"progression":[24],"cancer.":[26,99],"To":[27],"uncover":[28],"role":[31],"miRNAs":[33,93],"it":[34],"is":[35],"important":[36],"to":[37],"identify":[38],"genes.":[41],"The":[42],"small":[43],"number":[44,64,71],"experimentally":[46],"validated":[47],"makes":[50],"computer":[51],"prediction":[52,58],"methods":[53],"very":[54],"important.":[55],"However,":[56],"state-of-the-art":[57],"tools":[59],"result":[60],"a":[62],"great":[63],"putative":[66,90],"targets":[67,91],"with":[68,97],"an":[69],"unpredictable":[70],"false":[73],"positives.":[74],"In":[75],"this":[76],"paper,":[77],"we":[78],"propose":[79],"evaluate":[81],"two":[82],"approaches":[83],"for":[84],"ranking":[85],"relevance":[88],"which":[94],"associated":[96],"breast":[98]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
