{"id":"https://openalex.org/W2527429515","doi":"https://doi.org/10.1147/jrd.2016.2584798","title":"Design of the MCAW compute service for food safety bioinformatics","display_name":"Design of the MCAW compute service for food safety bioinformatics","publication_year":2016,"publication_date":"2016-09-01","ids":{"openalex":"https://openalex.org/W2527429515","doi":"https://doi.org/10.1147/jrd.2016.2584798","mag":"2527429515"},"language":"en","primary_location":{"id":"doi:10.1147/jrd.2016.2584798","is_oa":false,"landing_page_url":"https://doi.org/10.1147/jrd.2016.2584798","pdf_url":null,"source":{"id":"https://openalex.org/S4210219925","display_name":"IBM Journal of Research and Development","issn_l":"0018-8646","issn":["0018-8646","2151-8556"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320652","host_organization_name":"IBM","host_organization_lineage":["https://openalex.org/P4310320652"],"host_organization_lineage_names":["IBM"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IBM Journal of Research and Development","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073318076","display_name":"Stefan Edlund","orcid":"https://orcid.org/0000-0003-2786-2447"},"institutions":[{"id":"https://openalex.org/I4210085935","display_name":"IBM Research - Almaden","ror":"https://ror.org/005w8dd04","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210085935","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. B. Edlund","raw_affiliation_strings":["IBM Research, Almaden Research Center, San Jose, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Almaden Research Center, San Jose, CA, USA","institution_ids":["https://openalex.org/I4210085935"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073381107","display_name":"Kristen L. Beck","orcid":"https://orcid.org/0000-0002-4603-0235"},"institutions":[{"id":"https://openalex.org/I4210085935","display_name":"IBM Research - Almaden","ror":"https://ror.org/005w8dd04","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210085935","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. L. Beck","raw_affiliation_strings":["IBM Research, Almaden Research Center, San Jose, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Almaden Research Center, San Jose, CA, USA","institution_ids":["https://openalex.org/I4210085935"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054652878","display_name":"Niina Haiminen","orcid":"https://orcid.org/0000-0002-8663-1019"},"institutions":[{"id":"https://openalex.org/I4210114115","display_name":"IBM Research - Thomas J. Watson Research Center","ror":"https://ror.org/0265w5591","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N. Haiminen","raw_affiliation_strings":["IBM Research, Thomas J. Watson Research Center, Yorktown Heights, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Thomas J. Watson Research Center, Yorktown Heights, NY, USA","institution_ids":["https://openalex.org/I4210114115"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025497346","display_name":"Laxmi Parida","orcid":"https://orcid.org/0000-0002-7872-5074"},"institutions":[{"id":"https://openalex.org/I4210114115","display_name":"IBM Research - Thomas J. Watson Research Center","ror":"https://ror.org/0265w5591","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. P. Parida","raw_affiliation_strings":["IBM Research, Thomas J. Watson Research Center, Yorktown Heights, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Thomas J. Watson Research Center, Yorktown Heights, NY, USA","institution_ids":["https://openalex.org/I4210114115"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031024319","display_name":"Dylan Storey","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. B. Storey","raw_affiliation_strings":["Davis School of Veterinary Medicine, University of California, Davis, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Davis School of Veterinary Medicine, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087020653","display_name":"Bart C. Weimer","orcid":"https://orcid.org/0000-0002-7471-1978"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. C. Weimer","raw_affiliation_strings":["Davis School of Veterinary Medicine, University of California, Davis, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Davis School of Veterinary Medicine, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059270545","display_name":"James H. Kaufman","orcid":"https://orcid.org/0000-0002-7049-7134"},"institutions":[{"id":"https://openalex.org/I4210085935","display_name":"IBM Research - Almaden","ror":"https://ror.org/005w8dd04","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210085935","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. H. Kaufman","raw_affiliation_strings":["IBM Research, Almaden Research Center, San Jose, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Almaden Research Center, San Jose, CA, USA","institution_ids":["https://openalex.org/I4210085935"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082400487","display_name":"D. D. Chambliss","orcid":"https://orcid.org/0000-0003-0171-5166"},"institutions":[{"id":"https://openalex.org/I4210085935","display_name":"IBM Research - Almaden","ror":"https://ror.org/005w8dd04","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210085935","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. D. Chambliss","raw_affiliation_strings":["IBM Research, Almaden Research Center, San Jose, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Almaden Research Center, San Jose, CA, USA","institution_ids":["https://openalex.org/I4210085935"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.0447,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.79025402,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"60","issue":"5/6","first_page":"2:1","last_page":"2:12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.869753897190094},{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.5791784524917603},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.554733157157898},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.5377472043037415},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5279131531715393},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.5005965232849121},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4597809910774231},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.4527738690376282},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4212823212146759},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.38451439142227173},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3315127491950989},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.27596166729927063},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21523621678352356}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.869753897190094},{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.5791784524917603},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.554733157157898},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.5377472043037415},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5279131531715393},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.5005965232849121},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4597809910774231},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.4527738690376282},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4212823212146759},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.38451439142227173},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3315127491950989},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.27596166729927063},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21523621678352356},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1147/jrd.2016.2584798","is_oa":false,"landing_page_url":"https://doi.org/10.1147/jrd.2016.2584798","pdf_url":null,"source":{"id":"https://openalex.org/S4210219925","display_name":"IBM Journal of Research and Development","issn_l":"0018-8646","issn":["0018-8646","2151-8556"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320652","host_organization_name":"IBM","host_organization_lineage":["https://openalex.org/P4310320652"],"host_organization_lineage_names":["IBM"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IBM Journal of Research and Development","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1488730707","https://openalex.org/W1983764014","https://openalex.org/W1988925586","https://openalex.org/W2003347102","https://openalex.org/W2017571666","https://openalex.org/W2034285706","https://openalex.org/W2043813530","https://openalex.org/W2052908617","https://openalex.org/W2057215967","https://openalex.org/W2067872462","https://openalex.org/W2073029054","https://openalex.org/W2091731243","https://openalex.org/W2099837668","https://openalex.org/W2103441770","https://openalex.org/W2111680644","https://openalex.org/W2113915152","https://openalex.org/W2117260356","https://openalex.org/W2120172561","https://openalex.org/W2126419817","https://openalex.org/W2131271579","https://openalex.org/W2131645490","https://openalex.org/W2142070763","https://openalex.org/W2142678478","https://openalex.org/W2152722971","https://openalex.org/W2153027687","https://openalex.org/W2159954944","https://openalex.org/W2161645441","https://openalex.org/W2170551349","https://openalex.org/W2180146602","https://openalex.org/W2189465200","https://openalex.org/W2526392711","https://openalex.org/W2951176108","https://openalex.org/W4230266413","https://openalex.org/W6679471073","https://openalex.org/W6687322159"],"related_works":["https://openalex.org/W2388509490","https://openalex.org/W2109648960","https://openalex.org/W2166015079","https://openalex.org/W2050384624","https://openalex.org/W2776888796","https://openalex.org/W2388480422","https://openalex.org/W2624268110","https://openalex.org/W2951120646","https://openalex.org/W2356913294","https://openalex.org/W2460097992"],"abstract_inverted_index":{"The":[0,64],"techniques":[1],"of":[2,37,61,98,110,119],"microbe":[3],"community":[4,16],"genome":[5],"sequencing":[6],"as":[7],"applied":[8],"to":[9,58,68,79],"environmental":[10],"samples\u2014metagenomics\u2014offer":[11],"powerful":[12],"insight":[13],"into":[14],"microbial":[15,81],"structure":[17],"and":[18,35,47,54,75,83,96,102,113,116],"ecology":[19],"that":[20],"can":[21],"affect":[22],"food":[23,84],"safety":[24],"decisions":[25],"for":[26,72,93],"public":[27],"health":[28],"security.":[29],"In":[30],"this":[31],"paper,":[32],"the":[33,42,59,70,87],"design":[34],"characteristics":[36],"a":[38],"new":[39],"informatics":[40,106],"service,":[41],"<italic":[43],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[44],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">Metagenomics":[45],"Computation":[46],"Analytics":[48],"Workbench":[49],"(MCAW)</i>":[50],",":[51],"are":[52],"presented":[53],"illustrated":[55],"with":[56],"reference":[57],"analysis":[60,103],"metagenomics":[62],"data.":[63],"service":[65],"is":[66],"designed":[67],"meet":[69],"requirements":[71],"analyzing":[73],"metagenomic":[74],"metatranscriptomic":[76],"sequence":[77],"data":[78,111],"assess":[80],"hazards":[82],"authentication":[85],"in":[86],"supply":[88],"chain.":[89],"Moreover,":[90],"MCAW":[91],"provides":[92],"reliable":[94],"storage":[95],"management":[97],"raw":[99],"genomic":[100],"sequences":[101],"results,":[104],"high-volume":[105],"processing,":[107],"meticulous":[108],"tracking":[109],"provenance":[112],"processing":[114],"steps,":[115],"function-rich":[117],"visualization":[118],"results.":[120]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
