{"id":"https://openalex.org/W2526392711","doi":"https://doi.org/10.1147/jrd.2016.2582598","title":"Defining the food microbiome for authentication, safety, and process management","display_name":"Defining the food microbiome for authentication, safety, and process management","publication_year":2016,"publication_date":"2016-09-01","ids":{"openalex":"https://openalex.org/W2526392711","doi":"https://doi.org/10.1147/jrd.2016.2582598","mag":"2526392711"},"language":"en","primary_location":{"id":"doi:10.1147/jrd.2016.2582598","is_oa":false,"landing_page_url":"https://doi.org/10.1147/jrd.2016.2582598","pdf_url":null,"source":{"id":"https://openalex.org/S4210219925","display_name":"IBM Journal of Research and Development","issn_l":"0018-8646","issn":["0018-8646","2151-8556"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320652","host_organization_name":"IBM","host_organization_lineage":["https://openalex.org/P4310320652"],"host_organization_lineage_names":["IBM"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IBM Journal of Research and Development","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087020653","display_name":"Bart C. Weimer","orcid":"https://orcid.org/0000-0002-7471-1978"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. C. Weimer","raw_affiliation_strings":["Davis School of Veterinary Medicine, University of California, Davis, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Davis School of Veterinary Medicine, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031024319","display_name":"Dylan Storey","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. B. Storey","raw_affiliation_strings":["Davis School of Veterinary Medicine, University of California, Davis, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Davis School of Veterinary Medicine, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027250762","display_name":"Christopher A. Elkins","orcid":"https://orcid.org/0000-0002-6029-9812"},"institutions":[{"id":"https://openalex.org/I1285792802","display_name":"Center for Food Safety and Applied Nutrition","ror":"https://ror.org/05hzdft06","country_code":"US","type":"facility","lineage":["https://openalex.org/I1285792802","https://openalex.org/I1299022934","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. A. Elkins","raw_affiliation_strings":["Center for Food Safety and Applied Nutrition (CFSAN), Food and Drug Administration (FDA), Laurel, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Food Safety and Applied Nutrition (CFSAN), Food and Drug Administration (FDA), Laurel, MD, USA","institution_ids":["https://openalex.org/I1285792802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002947383","display_name":"Robert C. Baker","orcid":"https://orcid.org/0000-0001-7663-8535"},"institutions":[{"id":"https://openalex.org/I4210113968","display_name":"Mars (United States)","ror":"https://ror.org/028vrr082","country_code":"US","type":"company","lineage":["https://openalex.org/I4210113968"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. C. Baker","raw_affiliation_strings":["Mars Global Food Safety Center, Mars Incorporated, McLean, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mars Global Food Safety Center, Mars Incorporated, McLean, VA, USA","institution_ids":["https://openalex.org/I4210113968"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111945639","display_name":"P. J. Markwell","orcid":null},"institutions":[{"id":"https://openalex.org/I4210113968","display_name":"Mars (United States)","ror":"https://ror.org/028vrr082","country_code":"US","type":"company","lineage":["https://openalex.org/I4210113968"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. Markwell","raw_affiliation_strings":["Food Safety Science, Mars Incorporated, McLean, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Food Safety Science, Mars Incorporated, McLean, VA, USA","institution_ids":["https://openalex.org/I4210113968"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082400487","display_name":"D. D. Chambliss","orcid":"https://orcid.org/0000-0003-0171-5166"},"institutions":[{"id":"https://openalex.org/I4210085935","display_name":"IBM Research - Almaden","ror":"https://ror.org/005w8dd04","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210085935","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. D. Chambliss","raw_affiliation_strings":["IBM Research, Almaden Research Center, San Jose, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Almaden Research Center, San Jose, CA, USA","institution_ids":["https://openalex.org/I4210085935"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073318076","display_name":"Stefan Edlund","orcid":"https://orcid.org/0000-0003-2786-2447"},"institutions":[{"id":"https://openalex.org/I4210085935","display_name":"IBM Research - Almaden","ror":"https://ror.org/005w8dd04","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210085935","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. B. Edlund","raw_affiliation_strings":["IBM Research, Almaden Research Center, San Jose, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Almaden Research Center, San Jose, CA, USA","institution_ids":["https://openalex.org/I4210085935"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059270545","display_name":"James H. Kaufman","orcid":"https://orcid.org/0000-0002-7049-7134"},"institutions":[{"id":"https://openalex.org/I4210085935","display_name":"IBM Research - Almaden","ror":"https://ror.org/005w8dd04","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210085935","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. H. Kaufman","raw_affiliation_strings":["IBM Research, Almaden Research Center, San Jose, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Almaden Research Center, San Jose, CA, USA","institution_ids":["https://openalex.org/I4210085935"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":4.3415,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.93177677,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"60","issue":"5/6","first_page":"1:1","last_page":"1:13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11957","display_name":"Food Safety and Hygiene","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/traceability","display_name":"Traceability","score":0.5432918667793274},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.5404196381568909},{"id":"https://openalex.org/keywords/food-safety","display_name":"Food safety","score":0.5379998683929443},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.5061571002006531},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.458512544631958},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45622074604034424},{"id":"https://openalex.org/keywords/hazard-analysis-and-critical-control-points","display_name":"Hazard analysis and critical control points","score":0.44669127464294434},{"id":"https://openalex.org/keywords/supply-chain","display_name":"Supply chain","score":0.4208527207374573},{"id":"https://openalex.org/keywords/biotechnology","display_name":"Biotechnology","score":0.36778348684310913},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32772380113601685},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3056768774986267},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.25981080532073975},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.15977135300636292},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.1163744330406189}],"concepts":[{"id":"https://openalex.org/C153876917","wikidata":"https://www.wikidata.org/wiki/Q899704","display_name":"Traceability","level":2,"score":0.5432918667793274},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5404196381568909},{"id":"https://openalex.org/C516717267","wikidata":"https://www.wikidata.org/wiki/Q909821","display_name":"Food safety","level":2,"score":0.5379998683929443},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.5061571002006531},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.458512544631958},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45622074604034424},{"id":"https://openalex.org/C12546600","wikidata":"https://www.wikidata.org/wiki/Q279454","display_name":"Hazard analysis and critical control points","level":3,"score":0.44669127464294434},{"id":"https://openalex.org/C108713360","wikidata":"https://www.wikidata.org/wiki/Q1824206","display_name":"Supply chain","level":2,"score":0.4208527207374573},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.36778348684310913},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32772380113601685},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3056768774986267},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.25981080532073975},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.15977135300636292},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.1163744330406189},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1147/jrd.2016.2582598","is_oa":false,"landing_page_url":"https://doi.org/10.1147/jrd.2016.2582598","pdf_url":null,"source":{"id":"https://openalex.org/S4210219925","display_name":"IBM Journal of Research and Development","issn_l":"0018-8646","issn":["0018-8646","2151-8556"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320652","host_organization_name":"IBM","host_organization_lineage":["https://openalex.org/P4310320652"],"host_organization_lineage_names":["IBM"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IBM Journal of Research and Development","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332163","display_name":"U.S. Food and Drug Administration","ror":"https://ror.org/034xvzb47"},{"id":"https://openalex.org/F4320332564","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1578235839","https://openalex.org/W1914199722","https://openalex.org/W1966822396","https://openalex.org/W1969665700","https://openalex.org/W1979724564","https://openalex.org/W1979890304","https://openalex.org/W1986757867","https://openalex.org/W1994088389","https://openalex.org/W2007104673","https://openalex.org/W2030620493","https://openalex.org/W2034328107","https://openalex.org/W2036289641","https://openalex.org/W2041579725","https://openalex.org/W2043741824","https://openalex.org/W2043813530","https://openalex.org/W2052908617","https://openalex.org/W2052988927","https://openalex.org/W2060872094","https://openalex.org/W2062535783","https://openalex.org/W2075571730","https://openalex.org/W2075702858","https://openalex.org/W2081291022","https://openalex.org/W2088510902","https://openalex.org/W2089216231","https://openalex.org/W2091232725","https://openalex.org/W2091731243","https://openalex.org/W2093549903","https://openalex.org/W2096093282","https://openalex.org/W2097157577","https://openalex.org/W2098686923","https://openalex.org/W2112552161","https://openalex.org/W2117260356","https://openalex.org/W2121148773","https://openalex.org/W2129018127","https://openalex.org/W2134819521","https://openalex.org/W2137838265","https://openalex.org/W2139345750","https://openalex.org/W2143285777","https://openalex.org/W2151446662","https://openalex.org/W2151748773","https://openalex.org/W2157692150","https://openalex.org/W2162767575","https://openalex.org/W2168471165","https://openalex.org/W2171279910","https://openalex.org/W2324401375","https://openalex.org/W2527429515","https://openalex.org/W2567182178","https://openalex.org/W3137224376","https://openalex.org/W6634861594","https://openalex.org/W6731434767"],"related_works":["https://openalex.org/W2387866166","https://openalex.org/W3169693684","https://openalex.org/W2373101853","https://openalex.org/W1984559232","https://openalex.org/W2386555936","https://openalex.org/W2157576623","https://openalex.org/W4220800489","https://openalex.org/W2171456286","https://openalex.org/W1597211699","https://openalex.org/W2351921412"],"abstract_inverted_index":{"Under":[0],"intense":[1],"scrutiny":[2],"for":[3,39,43,199],"safety":[4,57],"and":[5,17,23,33,58,67,78,103,107,125,132,143,148,160,183,197],"authenticity,":[6,196],"our":[7],"food":[8],"supply":[9,110],"encompasses":[10],"probiotic":[11,30],"supplementation,":[12],"fermentation":[13],"organisms,":[14],"pathogenic":[15],"bacteria,":[16],"microbial":[18,180],"toxins\u2014in":[19],"short,":[20],"the":[21,37,101,109,114,116,127,154,187],"microbiome":[22,102,128],"metabolome":[24],"of":[25,46,71,100,113,152,156,189],"food.":[26,201],"Recent":[27],"claims":[28],"regarding":[29],"supplements,":[31],"additives,":[32],"cultured":[34],"foods":[35],"highlight":[36],"need":[38],"widely":[40],"accepted":[41],"protocols":[42],"evidence-based":[44],"oversight":[45],"such":[47],"products,":[48],"as":[49,51],"well":[50],"specific":[52],"methods":[53],"to":[54,83,90,96,123,139,193],"assess":[55],"their":[56],"authenticity.":[59],"Rapid":[60],"improvements":[61],"in":[62,165],"high-throughput":[63],"sequencing":[64],"technologies,":[65],"curated":[66],"annotated":[68],"reference":[69,141],"databases":[70,142],"whole":[72],"genome":[73],"sequences,":[74],"bacterial":[75],"strain":[76],"banks,":[77],"novel":[79],"informatics":[80],"techniques":[81,192],"coupled":[82],"a":[84,92,130,145,166],"scalable":[85],"computing":[86],"platform":[87],"are":[88,121,136],"poised":[89],"provide":[91],"robust":[93],"solution":[94],"extendable":[95],"encompass":[97],"systematic":[98],"authentication":[99],"its":[104],"variations":[105],"up":[106],"down":[108],"chain.":[111],"Members":[112],"Sequence":[115],"Food":[117],"Supply":[118],"Chain":[119],"Consortium":[120],"working":[122,138],"characterize":[124],"quantify":[126],"at":[129],"baseline":[131],"after":[133],"processing.":[134],"They":[135],"also":[137],"create":[140],"develop":[144],"Metagenomics":[146],"Computation":[147],"Analytics":[149],"Workbench,":[150],"capable":[151],"verifying":[153],"effectiveness":[155],"good":[157],"manufacturing":[158],"practices":[159],"monitoring":[161],"control":[162],"measures":[163],"highlighted":[164],"site's":[167],"Hazard":[168],"Analysis":[169],"Critical":[170],"Control":[171],"Point":[172],"plan.":[173],"In":[174],"this":[175],"paper,":[176],"we":[177],"propose":[178],"how":[179],"ecology,":[181],"evolvability,":[182],"phylogenetic":[184],"diversity":[185],"exhort":[186],"application":[188],"new":[190],"molecular":[191],"assure":[194],"safety,":[195],"traceability":[198],"wholesome":[200]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
