{"id":"https://openalex.org/W2293652778","doi":"https://doi.org/10.1145/565196.565234","title":"Discriminative motifs","display_name":"Discriminative motifs","publication_year":2002,"publication_date":"2002-04-18","ids":{"openalex":"https://openalex.org/W2293652778","doi":"https://doi.org/10.1145/565196.565234","mag":"2293652778"},"language":"en","primary_location":{"id":"doi:10.1145/565196.565234","is_oa":false,"landing_page_url":"https://doi.org/10.1145/565196.565234","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the sixth annual international conference on Computational biology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101657008","display_name":"Saurabh Sinha","orcid":"https://orcid.org/0000-0001-6033-7746"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Saurabh Sinha","raw_affiliation_strings":["University of Washington, Seattle, WA"],"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA","institution_ids":["https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5101657008"],"corresponding_institution_ids":["https://openalex.org/I201448701"],"apc_list":null,"apc_paid":null,"fwci":1.5571,"has_fulltext":false,"cited_by_count":77,"citation_normalized_percentile":{"value":0.82801447,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"291","last_page":"298"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.8538563251495361},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.6620645523071289},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5480388402938843},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.5441287159919739},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5192606449127197},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.5128545761108398},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46773678064346313},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.4668745696544647},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.43113693594932556},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32305634021759033},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19317945837974548},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1573682725429535},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15399169921875}],"concepts":[{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.8538563251495361},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.6620645523071289},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5480388402938843},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.5441287159919739},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5192606449127197},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.5128545761108398},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46773678064346313},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.4668745696544647},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.43113693594932556},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32305634021759033},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19317945837974548},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1573682725429535},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15399169921875},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/565196.565234","is_oa":false,"landing_page_url":"https://doi.org/10.1145/565196.565234","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the sixth annual international conference on Computational biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.7300000190734863,"display_name":"Reduced inequalities"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1600463518","https://openalex.org/W1956090332","https://openalex.org/W1998300401","https://openalex.org/W2014237818","https://openalex.org/W2017200304","https://openalex.org/W2032231928","https://openalex.org/W2056002855","https://openalex.org/W2077609634","https://openalex.org/W2081264480","https://openalex.org/W2084908610","https://openalex.org/W2124025352","https://openalex.org/W2137419493","https://openalex.org/W2138717237","https://openalex.org/W2140611547","https://openalex.org/W2152350018","https://openalex.org/W2152893838","https://openalex.org/W2162114340","https://openalex.org/W2611104316","https://openalex.org/W2912268188"],"related_works":["https://openalex.org/W2510961579","https://openalex.org/W2073661767","https://openalex.org/W2380185347","https://openalex.org/W2370034659","https://openalex.org/W2901448061","https://openalex.org/W2159636084","https://openalex.org/W2124433786","https://openalex.org/W2117168988","https://openalex.org/W2103777723","https://openalex.org/W2610941444"],"abstract_inverted_index":{"This":[0,44],"paper":[1],"takes":[2],"a":[3,10,22,32,39,55,67,78,121,131],"new":[4],"view":[5],"of":[6,24,41,52,81,98,112,120,154],"motif":[7,15,18,63,82,113,141],"discovery,":[8],"addressing":[9],"common":[11],"problem":[12],"in":[13,59,115,152,157],"existing":[14,50],"finders.":[16],"A":[17,95],"is":[19,101,125],"treated":[20],"as":[21],"feature":[23,53,97],"the":[25,110],"input":[26],"promoter":[27],"regions":[28],"that":[29,71,102],"leads":[30],"to":[31,48,62,75,138,146],"good":[33],"classifier":[34],"between":[35],"these":[36],"promoters":[37],"and":[38,92,143],"set":[40],"background":[42],"promoters.":[43,117],"perspective":[45],"allows":[46],"us":[47],"adapt":[49],"methods":[51],"selection,":[54],"well":[56],"studied":[57],"topic":[58],"machine":[60],"learning,":[61],"discovery.":[64],"We":[65,134],"develop":[66],"general":[68],"algorithmic":[69],"framework":[70,137],"can":[72],"be":[73],"specialized":[74],"work":[76],"with":[77,87],"wide":[79],"variety":[80],"models,":[83,142],"including":[84],"consensus":[85],"models":[86],"degenerate":[88],"symbols":[89],"or":[90],"mismatches,":[91],"composite":[93],"motifs.":[94],"key":[96],"our":[99,136],"algorithm":[100],"it":[103],"measures":[104],"over-representation":[105],"while":[106],"maintaining":[107],"information":[108],"about":[109],"distribution":[111],"instances":[114],"individual":[116],"The":[118],"assessment":[119],"motif's":[122],"discriminative":[123],"power":[124],"normalized":[126],"against":[127],"chance":[128],"behaviour":[129],"by":[130],"probabilistic":[132],"analysis.":[133],"apply":[135],"two":[139],"popular":[140],"are":[144],"able":[145],"detect":[147],"several":[148],"known":[149],"binding":[150],"sites":[151],"sets":[153],"co-regulated":[155],"genes":[156],"yeast.":[158]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
