{"id":"https://openalex.org/W4306317320","doi":"https://doi.org/10.1145/3511808.3557142","title":"PEMP: Leveraging Physics Properties to Enhance Molecular Property Prediction","display_name":"PEMP: Leveraging Physics Properties to Enhance Molecular Property Prediction","publication_year":2022,"publication_date":"2022-10-16","ids":{"openalex":"https://openalex.org/W4306317320","doi":"https://doi.org/10.1145/3511808.3557142"},"language":"en","primary_location":{"id":"doi:10.1145/3511808.3557142","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3511808.3557142","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3511808.3557142","source":{"id":"https://openalex.org/S4363608762","display_name":"Proceedings of the 31st ACM International Conference on Information &amp; Knowledge Management","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 31st ACM International Conference on Information &amp; Knowledge Management","raw_type":"proceedings-article"},"type":"article","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3511808.3557142","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101187991","display_name":"Yuancheng Sun","orcid":"https://orcid.org/0009-0003-9901-9296"},"institutions":[{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I4210112150","display_name":"Institute of Automation","ror":"https://ror.org/022c3hy66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112150"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yuancheng Sun","raw_affiliation_strings":["Institute of Automation, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing Academy of Artificial Intelligence, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Institute of Automation, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing Academy of Artificial Intelligence, Beijing, China","institution_ids":["https://openalex.org/I4210100255","https://openalex.org/I4210112150","https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100641782","display_name":"Yimeng Chen","orcid":"https://orcid.org/0000-0002-0588-8307"},"institutions":[{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I4210120485","display_name":"Academy of Mathematics and Systems Science","ror":"https://ror.org/02jkmyk67","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210120485"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yimeng Chen","raw_affiliation_strings":["Academy of Mathematics and Systems Science &amp; University of Chinese Academy of Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Academy of Mathematics and Systems Science &amp; University of Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210120485","https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040222654","display_name":"Weizhi Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weizhi Ma","raw_affiliation_strings":["Institute for AI Industry Research (AIR), Tsinghua University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Institute for AI Industry Research (AIR), Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006410199","display_name":"Wenhao Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenhao Huang","raw_affiliation_strings":["Beijing Academy of Artificial Intelligence, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Beijing Academy of Artificial Intelligence, Beijing, China","institution_ids":["https://openalex.org/I4210100255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100389886","display_name":"Kang Liu","orcid":"https://orcid.org/0000-0001-9270-1362"},"institutions":[{"id":"https://openalex.org/I4210112150","display_name":"Institute of Automation","ror":"https://ror.org/022c3hy66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112150"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kang Liu","raw_affiliation_strings":["Institute of Automation, Chinese Academy of Sciences &amp; University of Chinese Academy of Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Institute of Automation, Chinese Academy of Sciences &amp; University of Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210112150","https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102998706","display_name":"Zhiming Ma","orcid":"https://orcid.org/0000-0002-7560-9043"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210120485","display_name":"Academy of Mathematics and Systems Science","ror":"https://ror.org/02jkmyk67","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210120485"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiming Ma","raw_affiliation_strings":["Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210120485","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103733614","display_name":"Wei\u2010Ying Ma","orcid":"https://orcid.org/0000-0002-7384-0735"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei-Ying Ma","raw_affiliation_strings":["Institute for AI Industry Research (AIR), Tsinghua University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Institute for AI Industry Research (AIR), Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101616866","display_name":"Yanyan Lan","orcid":"https://orcid.org/0000-0002-7811-3262"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanyan Lan","raw_affiliation_strings":["Institute for AI Industry Research (AIR), Tsinghua University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Institute for AI Industry Research (AIR), Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5101187991"],"corresponding_institution_ids":["https://openalex.org/I4210100255","https://openalex.org/I4210112150","https://openalex.org/I4210165038"],"apc_list":null,"apc_paid":null,"fwci":1.5654,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.83442088,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"3505","last_page":"3513"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.7734897136688232},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7153641581535339},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.6922323107719421},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6440587639808655},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5987253785133362},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5137315988540649},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5047940015792847},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5045286417007446},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3642078638076782},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12653711438179016},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.09236946702003479}],"concepts":[{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.7734897136688232},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7153641581535339},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.6922323107719421},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6440587639808655},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5987253785133362},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5137315988540649},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5047940015792847},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5045286417007446},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3642078638076782},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12653711438179016},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.09236946702003479},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3511808.3557142","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3511808.3557142","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3511808.3557142","source":{"id":"https://openalex.org/S4363608762","display_name":"Proceedings of the 31st ACM International Conference on Information &amp; Knowledge Management","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 31st ACM International Conference on Information &amp; Knowledge Management","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:2211.01978","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2211.01978","pdf_url":"https://arxiv.org/pdf/2211.01978","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"doi:10.1145/3511808.3557142","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3511808.3557142","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3511808.3557142","source":{"id":"https://openalex.org/S4363608762","display_name":"Proceedings of the 31st ACM International Conference on Information &amp; Knowledge Management","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 31st ACM International Conference on Information &amp; Knowledge Management","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3416309951","display_name":null,"funder_award_id":"ZDBS-SSW-JSC006","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G7757904293","display_name":null,"funder_award_id":"-SSW-","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"}],"funders":[{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320322392","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549"},{"id":"https://openalex.org/F4320322847","display_name":"Youth Innovation Promotion Association of the Chinese Academy of Sciences","ror":"https://ror.org/031141b54"},{"id":"https://openalex.org/F4320335892","display_name":"Youth Innovation Promotion Association","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4306317320.pdf","grobid_xml":"https://content.openalex.org/works/W4306317320.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W324102958","https://openalex.org/W1527894967","https://openalex.org/W1973881933","https://openalex.org/W1988037271","https://openalex.org/W1991509950","https://openalex.org/W2008505552","https://openalex.org/W2060531713","https://openalex.org/W2076498053","https://openalex.org/W2080242559","https://openalex.org/W2080635178","https://openalex.org/W2096541451","https://openalex.org/W2290847742","https://openalex.org/W2406943157","https://openalex.org/W2461620095","https://openalex.org/W2594183968","https://openalex.org/W2606780347","https://openalex.org/W2742941679","https://openalex.org/W2900694120","https://openalex.org/W2905674093","https://openalex.org/W2911107164","https://openalex.org/W2953128081","https://openalex.org/W2968734407","https://openalex.org/W2987522751","https://openalex.org/W2992586577","https://openalex.org/W3005552578","https://openalex.org/W3021911166","https://openalex.org/W3034516664","https://openalex.org/W3036737467","https://openalex.org/W3095883070","https://openalex.org/W3100157108","https://openalex.org/W3126679164","https://openalex.org/W3137551757","https://openalex.org/W3209595292","https://openalex.org/W3211477647","https://openalex.org/W3211952335","https://openalex.org/W3212362876","https://openalex.org/W4221149947","https://openalex.org/W4287325738","https://openalex.org/W4287556187","https://openalex.org/W4287828570","https://openalex.org/W4299358177","https://openalex.org/W4300537282"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W972276598","https://openalex.org/W2087343574","https://openalex.org/W2071516466","https://openalex.org/W2932872266"],"abstract_inverted_index":{"Molecular":[0,60],"property":[1,89,94,122],"prediction":[2,46,62,95,123],"is":[3],"essential":[4],"for":[5,102],"drug":[6],"discovery.":[7],"In":[8,48,125],"recent":[9],"years,":[10],"deep":[11],"learning":[12,108,139],"methods":[13,28,101,113,163],"have":[14,164],"been":[15],"introduced":[16],"to":[17,40,64,167],"this":[18,49],"area":[19],"and":[20,75,87,109,120,141],"achieved":[21],"state-of-the-art":[22,132,170],"performances.":[23],"However,":[24],"most":[25],"of":[26,44,84,150],"existing":[27],"ignore":[29],"the":[30,42,82,85,131,137,142,146,161,165],"intrinsic":[31],"relations":[32,66],"between":[33,67],"molecular":[34,68],"properties":[35,58,69],"which":[36],"can":[37],"be":[38],"utilized":[39],"improve":[41],"performances":[43],"corresponding":[45,169],"tasks.":[47,96],"paper,":[50],"we":[51,80,128],"propose":[52],"a":[53,115,121],"new":[54],"approach,":[55],"namely":[56],"Physics":[57],"Enhanced":[59],"Property":[61],"(PEMP),":[63],"utilize":[65],"revealed":[70],"by":[71],"previous":[72],"physics":[73,93],"theory":[74],"physical":[76],"chemistry":[77],"studies.":[78],"Specifically,":[79],"enhance":[81],"training":[83],"chemical":[86],"physiological":[88],"predictors":[90],"with":[91],"related":[92],"We":[97],"design":[98],"two":[99],"different":[100],"PEMP,":[103,151],"respectively":[104],"based":[105],"on":[106,155],"multi-task":[107],"transfer":[110],"learning.":[111],"Both":[112],"include":[114],"model-agnostic":[116],"molecule":[117,133,147],"representation":[118,148],"module":[119,149],"module.":[124],"our":[126],"implementation,":[127],"adopt":[129],"both":[130],"embedding":[134],"models":[135],"under":[136],"supervised":[138],"paradigm":[140,144],"pretraining":[143],"as":[145],"respectively.":[152],"Experimental":[153],"results":[154],"public":[156],"benchmark":[157],"MoleculeNet":[158],"show":[159],"that":[160],"proposed":[162],"ability":[166],"outperform":[168],"models.":[171]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
