{"id":"https://openalex.org/W4284965832","doi":"https://doi.org/10.1145/3491418.3535139","title":"Experience Migrating a Pipeline for the C-M\u0100IKI gateway from Tapis v2 to Tapis v3","display_name":"Experience Migrating a Pipeline for the C-M\u0100IKI gateway from Tapis v2 to Tapis v3","publication_year":2022,"publication_date":"2022-07-08","ids":{"openalex":"https://openalex.org/W4284965832","doi":"https://doi.org/10.1145/3491418.3535139"},"language":"en","primary_location":{"id":"doi:10.1145/3491418.3535139","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3491418.3535139","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029402989","display_name":"Yick Ching Wong","orcid":"https://orcid.org/0000-0002-3837-461X"},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yick Ching Wong","raw_affiliation_strings":["University of Hawaii at Manoa, USA"],"affiliations":[{"raw_affiliation_string":"University of Hawaii at Manoa, USA","institution_ids":["https://openalex.org/I117965899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080587331","display_name":"Sean B. Cleveland","orcid":"https://orcid.org/0000-0002-7130-3434"},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean B. Cleveland","raw_affiliation_strings":["University of Hawaii at Manoa, USA"],"affiliations":[{"raw_affiliation_string":"University of Hawaii at Manoa, USA","institution_ids":["https://openalex.org/I117965899"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090961587","display_name":"Gwen A. Jacobs","orcid":"https://orcid.org/0000-0002-9925-6916"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gwen A. Jacobs","raw_affiliation_strings":["gwenjh@hawaii.edu, USA"],"affiliations":[{"raw_affiliation_string":"gwenjh@hawaii.edu, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029402989"],"corresponding_institution_ids":["https://openalex.org/I117965899"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05942867,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9681000113487244,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7268109321594238},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6228270530700684},{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.5787593126296997},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5104135870933533},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5081396102905273},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.475212424993515},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.20728713274002075},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.16979119181632996}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7268109321594238},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6228270530700684},{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.5787593126296997},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5104135870933533},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5081396102905273},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.475212424993515},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.20728713274002075},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.16979119181632996}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3491418.3535139","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3491418.3535139","pdf_url":null,"source":{"id":"https://openalex.org/S4306523034","display_name":"Practice and Experience in Advanced Research Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Practice and Experience in Advanced Research Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5699999928474426,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G6907826081","display_name":null,"funder_award_id":"1931439, 1931575,1557349, 1636402","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1596936080","https://openalex.org/W2001818158","https://openalex.org/W2605897695","https://openalex.org/W2613409207","https://openalex.org/W3156001951"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2461970972","https://openalex.org/W3181407718","https://openalex.org/W2364921833","https://openalex.org/W2388030554","https://openalex.org/W2302028273","https://openalex.org/W1525643724","https://openalex.org/W4294281692","https://openalex.org/W2886811623","https://openalex.org/W2959872456"],"abstract_inverted_index":{"The":[0],"C-M\u0100IKI":[1,33],"gateway":[2,6,34],"is":[3,27],"a":[4,9,72,89,94],"science":[5],"that":[7,43],"leverages":[8],"computational":[10],"workload":[11],"management":[12],"API":[13],"called":[14],"Tapis":[15,37,40,52],"to":[16,39,85,88,97],"support":[17,98],"modern,":[18],"interoperable,":[19],"and":[20,55,108],"scalable":[21],"microbiome":[22,68],"data":[23],"analysis.":[24],"This":[25,58,103],"project":[26],"focused":[28],"on":[29],"migrating":[30],"an":[31],"existing":[32,67],"pipeline":[35],"from":[36],"v2":[38],"v3":[41,53],"so":[42],"it":[44],"can":[45],"take":[46],"advantage":[47],"of":[48,65,78,93],"the":[49,79,83,99,106,112],"new":[50,73],"robust":[51],"features":[54],"stay":[56],"modern.":[57],"requires":[59],"three":[60],"major":[61],"steps:":[62],"1)":[63],"Containerization":[64],"each":[66,77],"workflow.":[69],"2)":[70],"Create":[71],"app":[74],"definition":[75],"for":[76],"workflows.":[80],"3)":[81],"Enabling":[82],"ability":[84],"submit":[86],"jobs":[87],"SLURM":[90],"scheduler":[91],"inside":[92],"singularity":[95],"container":[96],"Nextflow":[100],"workflow":[101],"manager.":[102],"work":[104],"presents":[105],"experience":[107],"challenges":[109],"in":[110],"upgrading":[111],"pipeline.":[113]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
