{"id":"https://openalex.org/W2746835573","doi":"https://doi.org/10.1145/3107411.3107508","title":"String-Based Models for Predicting RNA-Protein Interaction","display_name":"String-Based Models for Predicting RNA-Protein Interaction","publication_year":2017,"publication_date":"2017-08-20","ids":{"openalex":"https://openalex.org/W2746835573","doi":"https://doi.org/10.1145/3107411.3107508","mag":"2746835573"},"language":"en","primary_location":{"id":"doi:10.1145/3107411.3107508","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107508","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085141731","display_name":"Donald Adjeroh","orcid":"https://orcid.org/0000-0002-7982-4744"},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Donald Adjeroh","raw_affiliation_strings":["West Virginia University, Morgantown, WV, USA"],"affiliations":[{"raw_affiliation_string":"West Virginia University, Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020714969","display_name":"Maen Allaga","orcid":null},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maen Allaga","raw_affiliation_strings":["West Virginia University, Morgantown, WV, USA"],"affiliations":[{"raw_affiliation_string":"West Virginia University, Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010046194","display_name":"Jun Tan","orcid":"https://orcid.org/0000-0001-6539-1194"},"institutions":[{"id":"https://openalex.org/I12097938","display_name":"West Virginia University","ror":"https://ror.org/011vxgd24","country_code":"US","type":"education","lineage":["https://openalex.org/I12097938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jun Tan","raw_affiliation_strings":["West Virginia University, Morgantown, WV, USA"],"affiliations":[{"raw_affiliation_string":"West Virginia University, Morgantown, WV, USA","institution_ids":["https://openalex.org/I12097938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030005076","display_name":"Jie Lin","orcid":"https://orcid.org/0000-0002-8971-0660"},"institutions":[{"id":"https://openalex.org/I111753288","display_name":"Fujian Normal University","ror":"https://ror.org/020azk594","country_code":"CN","type":"education","lineage":["https://openalex.org/I111753288"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Lin","raw_affiliation_strings":["Fujian Normal University, Fuzhou, China"],"affiliations":[{"raw_affiliation_string":"Fujian Normal University, Fuzhou, China","institution_ids":["https://openalex.org/I111753288"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108613552","display_name":"Yue Jiang","orcid":"https://orcid.org/0000-0001-6654-1609"},"institutions":[{"id":"https://openalex.org/I111753288","display_name":"Fujian Normal University","ror":"https://ror.org/020azk594","country_code":"CN","type":"education","lineage":["https://openalex.org/I111753288"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Jiang","raw_affiliation_strings":["Fujian Normal University, Fuzho, China"],"affiliations":[{"raw_affiliation_string":"Fujian Normal University, Fuzho, China","institution_ids":["https://openalex.org/I111753288"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016943900","display_name":"Ahmed Abbasi","orcid":"https://orcid.org/0000-0001-7698-7794"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ahmed Abbasi","raw_affiliation_strings":["University of Virginia, Charlottesville, VA, USA"],"affiliations":[{"raw_affiliation_string":"University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5106792514","display_name":"Xiaobo Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I47251452","display_name":"Wake Forest University","ror":"https://ror.org/0207ad724","country_code":"US","type":"education","lineage":["https://openalex.org/I47251452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaobo Zhou","raw_affiliation_strings":["Wake Forest University Health Sciences, Winston-Salem, NC, USA"],"affiliations":[{"raw_affiliation_string":"Wake Forest University Health Sciences, Winston-Salem, NC, USA","institution_ids":["https://openalex.org/I47251452"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5085141731"],"corresponding_institution_ids":["https://openalex.org/I12097938"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08821825,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"661","last_page":"666"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.7665413618087769},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5796741247177124},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5330060124397278},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4191412329673767},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.405882865190506},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3902386724948883},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.26045137643814087},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14194324612617493},{"id":"https://openalex.org/keywords/theoretical-physics","display_name":"Theoretical physics","score":0.10648629069328308},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08148598670959473}],"concepts":[{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.7665413618087769},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5796741247177124},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5330060124397278},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4191412329673767},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.405882865190506},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3902386724948883},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.26045137643814087},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14194324612617493},{"id":"https://openalex.org/C33332235","wikidata":"https://www.wikidata.org/wiki/Q18362","display_name":"Theoretical physics","level":1,"score":0.10648629069328308},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08148598670959473},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3107411.3107508","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107508","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G961648742","display_name":null,"funder_award_id":"IIS-1552860, IIS-1553109","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W261595532","https://openalex.org/W938539187","https://openalex.org/W1488229309","https://openalex.org/W1679038547","https://openalex.org/W1737647356","https://openalex.org/W1842452185","https://openalex.org/W1951403192","https://openalex.org/W1982267716","https://openalex.org/W1990061958","https://openalex.org/W2009736453","https://openalex.org/W2025150647","https://openalex.org/W2025763720","https://openalex.org/W2047647552","https://openalex.org/W2059513841","https://openalex.org/W2064515831","https://openalex.org/W2070958311","https://openalex.org/W2072394638","https://openalex.org/W2076443836","https://openalex.org/W2082565035","https://openalex.org/W2089652064","https://openalex.org/W2100981947","https://openalex.org/W2103250001","https://openalex.org/W2103683291","https://openalex.org/W2114027069","https://openalex.org/W2119501676","https://openalex.org/W2158874082","https://openalex.org/W2169379013","https://openalex.org/W2175286270"],"related_works":["https://openalex.org/W2147993839","https://openalex.org/W1840103016","https://openalex.org/W54859794","https://openalex.org/W2064941026","https://openalex.org/W2359508303","https://openalex.org/W1983151649","https://openalex.org/W2057323302","https://openalex.org/W1966225171","https://openalex.org/W2028642547","https://openalex.org/W4401590094"],"abstract_inverted_index":{"In":[0],"this":[1],"work,":[2],"we":[3],"study":[4],"string-based":[5,50,67],"approaches":[6],"for":[7,26,52],"the":[8,62,65],"problem":[9],"of":[10,28,64],"RNA-Protein":[11],"Interaction":[12],"(RPI).":[13],"We":[14,57],"apply":[15],"string":[16,24],"algorithms":[17],"and":[18,35,38,42],"data":[19],"structures":[20],"to":[21,48],"extract":[22],"effective":[23],"patterns":[25],"prediction":[27],"RPI,":[29],"using":[30],"both":[31],"sequence":[32],"information":[33,40],"(protein":[34,41],"RNA":[36,43],"sequences),":[37],"structure":[39],"secondary":[44],"structures).":[45],"This":[46],"led":[47],"different":[49],"models":[51],"predicting":[53],"interacting":[54],"RNA-protein":[55],"pairs.":[56],"show":[58],"results":[59,71],"that":[60],"demonstrate":[61],"effectiveness":[63],"proposed":[66],"models,":[68],"including":[69],"comparative":[70],"against":[72],"state-of-the-art":[73],"methods.":[74]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
