{"id":"https://openalex.org/W2745674910","doi":"https://doi.org/10.1145/3107411.3107443","title":"Cophenetic Median Trees Under the Manhattan Distance","display_name":"Cophenetic Median Trees Under the Manhattan Distance","publication_year":2017,"publication_date":"2017-08-20","ids":{"openalex":"https://openalex.org/W2745674910","doi":"https://doi.org/10.1145/3107411.3107443","mag":"2745674910"},"language":"en","primary_location":{"id":"doi:10.1145/3107411.3107443","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107443","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006412633","display_name":"Alexey Markin","orcid":"https://orcid.org/0000-0003-3280-9050"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexey Markin","raw_affiliation_strings":["Iowa State University, Ames, IA, USA"],"affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041404337","display_name":"Oliver Eulenstein","orcid":"https://orcid.org/0000-0002-5291-3798"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oliver Eulenstein","raw_affiliation_strings":["Iowa State University, Ames, IA, USA"],"affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5006412633"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":null,"apc_paid":null,"fwci":0.4144,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.65841661,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"194","last_page":"202"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10374","display_name":"Advanced Graph Theory Research","score":0.9787999987602234,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9739999771118164,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5308977961540222},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3713245391845703},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3384462594985962},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24742764234542847}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5308977961540222},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3713245391845703},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3384462594985962},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24742764234542847}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3107411.3107443","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3107411.3107443","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1825040754","display_name":null,"funder_award_id":"1617626","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1981037505","https://openalex.org/W2002358818","https://openalex.org/W2039334367","https://openalex.org/W2044789562","https://openalex.org/W2055063781","https://openalex.org/W2075503802","https://openalex.org/W2088512249","https://openalex.org/W2094277888","https://openalex.org/W2099272153","https://openalex.org/W2132400700","https://openalex.org/W2159447863","https://openalex.org/W2260854779","https://openalex.org/W4285719527","https://openalex.org/W4388212639"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"Computing":[0],"median":[1,52,66,82],"trees":[2,5,53],"from":[3,28],"gene":[4],"using":[6,180],"path-difference":[7],"metrics":[8,19,25,58],"has":[9,59,119],"provided":[10],"several":[11],"credible":[12],"species":[13],"tree":[14,67,83],"estimates.":[15],"Similar":[16],"to":[17],"these":[18],"is":[20,78,124,160],"the":[21,40,45,48,106,114,133,150,161,164,169],"cophenetic":[22,46,112,137],"family":[23,56],"of":[24,44,50,57,97,99,156,163,171],"that":[26,93,123,147],"originates":[27],"a":[29,100,111,120,154,177],"dendrogram":[30],"comparison":[31],"metric":[32,113],"introduced":[33],"more":[34],"than":[35],"50":[36],"years":[37],"ago.":[38],"Despite":[39],"tradition":[41],"and":[42],"appeal":[43],"metrics,":[47],"problem":[49,77,109,146],"computing":[51],"under":[54,110],"this":[55,76,145],"not":[60],"been":[61,86],"analyzed.":[62],"Like":[63],"other":[64],"standard":[65],"problems":[68,84],"relevant":[69],"in":[70,176],"practice,":[71],"as":[72],"we":[73,139],"show":[74],"here,":[75],"also":[79],"NP-hard.":[80],"NP-hard":[81],"have":[85],"successfully":[87],"addressed":[88],"by":[89,153],"local":[90,102,107,173],"search":[91,103,108,174],"heuristics":[92],"are":[94],"solving":[95],"thousands":[96],"instances":[98],"corresponding":[101],"problem.":[104],"For":[105],"best":[115],"known":[116],"(naive)":[117],"algorithm":[118,143,175],"time":[121],"complexity":[122],"typically":[125],"prohibitive":[126],"for":[127,144],"effective":[128],"heuristic":[129],"searches.":[130],"Focusing":[131],"on":[132,149],"Manhattan":[134],"norm":[135],"(Manhattan":[136],"metric),":[138],"describe":[140],"an":[141],"efficient":[142],"improves":[148],"naive":[151],"solution":[152],"factor":[155],"n,":[157],"where":[158],"n":[159],"size":[162],"input":[165],"trees.":[166],"We":[167],"demonstrate":[168],"performance":[170],"our":[172],"comparative":[178],"study":[179],"published":[181],"empirical":[182],"data":[183],"sets.":[184]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
