{"id":"https://openalex.org/W2052055078","doi":"https://doi.org/10.1145/2023607.2023644","title":"Parallel models for sequence alignment on CPU and GPU","display_name":"Parallel models for sequence alignment on CPU and GPU","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2052055078","doi":"https://doi.org/10.1145/2023607.2023644","mag":"2052055078"},"language":"en","primary_location":{"id":"doi:10.1145/2023607.2023644","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2023607.2023644","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th International Conference on Computer Systems and Technologies - CompSysTech '11","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033889948","display_name":"Pl\u0430m\u0435nk\u0430 Borovsk\u0430","orcid":null},"institutions":[{"id":"https://openalex.org/I31151848","display_name":"Technical University of Sofia","ror":"https://ror.org/052prhs50","country_code":"BG","type":"education","lineage":["https://openalex.org/I31151848"]}],"countries":["BG"],"is_corresponding":true,"raw_author_name":"Plamenka Borovska","raw_affiliation_strings":["Technical University of Sofia"],"affiliations":[{"raw_affiliation_string":"Technical University of Sofia","institution_ids":["https://openalex.org/I31151848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041739830","display_name":"Milena Lazarova","orcid":"https://orcid.org/0000-0002-8256-0831"},"institutions":[{"id":"https://openalex.org/I31151848","display_name":"Technical University of Sofia","ror":"https://ror.org/052prhs50","country_code":"BG","type":"education","lineage":["https://openalex.org/I31151848"]}],"countries":["BG"],"is_corresponding":false,"raw_author_name":"Milena Lazarova","raw_affiliation_strings":["Technical University of Sofia"],"affiliations":[{"raw_affiliation_string":"Technical University of Sofia","institution_ids":["https://openalex.org/I31151848"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5033889948"],"corresponding_institution_ids":["https://openalex.org/I31151848"],"apc_list":null,"apc_paid":null,"fwci":0.1303,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.51939136,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"210","last_page":"210"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8625142574310303},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.8076051473617554},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.8017836809158325},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5896446108818054},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.5157535076141357},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.4812450110912323},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.4710281491279602},{"id":"https://openalex.org/keywords/coprocessor","display_name":"Coprocessor","score":0.4562791585922241},{"id":"https://openalex.org/keywords/central-processing-unit","display_name":"Central processing unit","score":0.4521971344947815},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3993830978870392},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3462502360343933},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.20192214846611023},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13585245609283447},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.12740200757980347},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12177726626396179},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.08464965224266052}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8625142574310303},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.8076051473617554},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.8017836809158325},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5896446108818054},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.5157535076141357},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.4812450110912323},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.4710281491279602},{"id":"https://openalex.org/C86111242","wikidata":"https://www.wikidata.org/wiki/Q859595","display_name":"Coprocessor","level":2,"score":0.4562791585922241},{"id":"https://openalex.org/C49154492","wikidata":"https://www.wikidata.org/wiki/Q5300","display_name":"Central processing unit","level":2,"score":0.4521971344947815},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3993830978870392},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3462502360343933},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.20192214846611023},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13585245609283447},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.12740200757980347},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12177726626396179},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.08464965224266052},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2023607.2023644","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2023607.2023644","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th International Conference on Computer Systems and Technologies - CompSysTech '11","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1573897044","https://openalex.org/W1592614241","https://openalex.org/W2011652244","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2116715773","https://openalex.org/W2133540884","https://openalex.org/W2142063929","https://openalex.org/W2156140864","https://openalex.org/W2165949232"],"related_works":["https://openalex.org/W2342866599","https://openalex.org/W2503163466","https://openalex.org/W2948014085","https://openalex.org/W2004215917","https://openalex.org/W2271965480","https://openalex.org/W1972148443","https://openalex.org/W2061938028","https://openalex.org/W2103737249","https://openalex.org/W1974956921","https://openalex.org/W2139695554"],"abstract_inverted_index":{"The":[0,62],"paper":[1],"presents":[2],"parallel":[3,35],"computational":[4],"models":[5],"of":[6,17,21,71],"Smith-Waterman":[7],"algorithm":[8],"for":[9,39,69],"CPU":[10,52],"and":[11,28,47,77],"GPU.":[12],"An":[13],"investigation":[14],"is":[15],"made":[16],"the":[18,33,72],"performance":[19],"parameters":[20],"computing":[22],"similarity":[23],"indexes":[24],"between":[25],"query":[26],"sequences":[27],"a":[29],"reference":[30],"sequence":[31,42,54],"using":[32,44,56],"suggested":[34],"programming":[36],"models.":[37],"Implementations":[38],"GPU":[40],"based":[41,53],"alignment":[43,55],"nVIDIA":[45],"CUDA":[46],"OpenCL":[48],"as":[49,51],"well":[50],"OpenMP":[57],"multithreaded":[58],"implementation":[59],"are":[60,65],"presented.":[61],"experimental":[63],"analyses":[64],"aimed":[66],"at":[67],"searching":[68],"similarities":[70],"human":[73],"gamma":[74],"interferon":[75],"protein":[76],"influenza":[78],"virus.":[79]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}