{"id":"https://openalex.org/W2069281609","doi":"https://doi.org/10.1145/2016741.2016743","title":"neoGRID","display_name":"neoGRID","publication_year":2011,"publication_date":"2011-07-18","ids":{"openalex":"https://openalex.org/W2069281609","doi":"https://doi.org/10.1145/2016741.2016743","mag":"2069281609"},"language":"en","primary_location":{"id":"doi:10.1145/2016741.2016743","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2016741.2016743","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114248125","display_name":"Arun K. Datta","orcid":null},"institutions":[{"id":"https://openalex.org/I4210112098","display_name":"National University","ror":"https://ror.org/01zjrck77","country_code":"US","type":"education","lineage":["https://openalex.org/I4210086682","https://openalex.org/I4210112098"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Arun K. Datta","raw_affiliation_strings":["National University (NUCRI), La Jolla, CA"],"affiliations":[{"raw_affiliation_string":"National University (NUCRI), La Jolla, CA","institution_ids":["https://openalex.org/I4210112098"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083901867","display_name":"Becca Eller","orcid":null},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Becca Eller","raw_affiliation_strings":["University of Kentucky, Lexington, KY"],"affiliations":[{"raw_affiliation_string":"University of Kentucky, Lexington, KY","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004240604","display_name":"Anthony P. Sinai","orcid":"https://orcid.org/0000-0003-0821-5869"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anthony P. Sinai","raw_affiliation_strings":["University of Kentucky, Lexington, KY"],"affiliations":[{"raw_affiliation_string":"University of Kentucky, Lexington, KY","institution_ids":["https://openalex.org/I143302722"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5114248125"],"corresponding_institution_ids":["https://openalex.org/I4210112098"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09954191,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11155","display_name":"Toxoplasma gondii Research Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2405","display_name":"Parasitology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11155","display_name":"Toxoplasma gondii Research Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2405","display_name":"Parasitology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7437807321548462},{"id":"https://openalex.org/keywords/cyberinfrastructure","display_name":"Cyberinfrastructure","score":0.7261579036712646},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.675926923751831},{"id":"https://openalex.org/keywords/health-informatics-tools","display_name":"Health informatics tools","score":0.6140561699867249},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.49725964665412903},{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.4955381155014038},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3913237154483795},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.3766896426677704},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.21942993998527527},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.14294016361236572},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12506580352783203},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09620600938796997}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7437807321548462},{"id":"https://openalex.org/C2776397876","wikidata":"https://www.wikidata.org/wiki/Q1450531","display_name":"Cyberinfrastructure","level":2,"score":0.7261579036712646},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.675926923751831},{"id":"https://openalex.org/C167785021","wikidata":"https://www.wikidata.org/wiki/Q5691083","display_name":"Health informatics tools","level":3,"score":0.6140561699867249},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.49725964665412903},{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.4955381155014038},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3913237154483795},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.3766896426677704},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.21942993998527527},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.14294016361236572},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12506580352783203},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09620600938796997},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/2016741.2016743","is_oa":false,"landing_page_url":"https://doi.org/10.1145/2016741.2016743","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332222","display_name":"University of Illinois at Urbana-Champaign","ror":"https://ror.org/047426m28"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1793789538","https://openalex.org/W1949917588","https://openalex.org/W1970909531","https://openalex.org/W1999147304","https://openalex.org/W2027746300","https://openalex.org/W2037843515","https://openalex.org/W2038679704","https://openalex.org/W2043355127","https://openalex.org/W2046031514","https://openalex.org/W2048141918","https://openalex.org/W2059412483","https://openalex.org/W2097659338","https://openalex.org/W2110143427","https://openalex.org/W2116261764","https://openalex.org/W2154750541","https://openalex.org/W2396004220","https://openalex.org/W4243807632"],"related_works":["https://openalex.org/W2463183163","https://openalex.org/W2095735890","https://openalex.org/W2017123803","https://openalex.org/W2974071312","https://openalex.org/W2320705913","https://openalex.org/W2955949264","https://openalex.org/W2005011662","https://openalex.org/W3174814859","https://openalex.org/W4311292698","https://openalex.org/W4309236105"],"abstract_inverted_index":{"The":[0,213],"neoGRID":[1,34,119,206],"is":[2,20,35,217,369,389],"under":[3,371],"development":[4],"in":[5,71,128,150,160,178,261,289,391],"Quarry,":[6],"a":[7,21,39,82,153,179,225,256,262,302,340,345,353,380],"virtual":[8],"hosting":[9],"environment,":[10],"for":[11,26,43,90,123,144,165,186,207,315,348,356,373],"working":[12],"with":[13,113,335],"Taverna-based":[14],"workflow":[15],"utilizing":[16],"grid":[17],"computing.":[18],"Taverna":[19],"graphical":[22],"workbench":[23],"often":[24],"used":[25],"biomedical":[27],"informatics":[28],"[1,":[29],"and":[30,54,105,109,133,168,173,243,301,323],"the":[31,44,78,129,138,203,218,236,252,292,336],"references":[32],"therein].":[33],"designed":[36,143],"to":[37,50,102,137,235,274,286,312],"offer":[38],"HPC-supported":[40],"collaborative":[41,180],"environment":[42,181],"researchers":[45],"from":[46,233],"multidisciplinary":[47],"scientific":[48,107,111],"fields":[49],"gather":[51],"data,":[52],"integrate":[53],"analyze":[55],"using":[56,190,377],"teragrid":[57],"resources.":[58],"A":[59,363],"significant":[60,154],"number":[61,155],"of":[62,84,92,156,175,192,205,209,211,215,221,227,240,255,265,366],"resources":[63],"including":[64],"bioinformatics":[65],"tools":[66,85],"[2]":[67],"has":[68,248,309,332],"been":[69,249,284,310],"deployed":[70],"TeraGrid,":[72],"an":[73],"NSF":[74],"funded":[75],"project.":[76],"Besides,":[77],"myGrid":[79],"team":[80],"produced":[81],"suite":[83],"that":[86,162,229,329],"are":[87,158,163],"made":[88],"available":[89,136,149,159,185,390],"analysis":[91,146,167,208,325,365,384],"proteins.":[93],"In":[94],"addition,":[95],"their":[96],"myExperiment":[97],"site":[98],"makes":[99],"it":[100],"easy":[101],"find,":[103],"use":[104],"share":[106],"workflows":[108,157,177],"building":[110],"communities":[112],"common":[114],"interests.":[115],"This":[116,351],"Cyberinfrastructure":[117],"(CI)-supported":[118],"can":[120],"be":[121,135,148,184,287,313],"utilized":[122],"protein":[124,131,166,280],"motifs":[125,308,368],"analysis,":[126],"particularly":[127],"glycosyltransferase":[130,193],"family":[132,195],"will":[134,147,182],"Glyco-Community":[139],"[3].":[140],"Workflows":[141],"specifically":[142],"such":[145],"neoGRID.":[151,392],"Moreover,":[152],"KEGG":[161],"useful":[164],"drug":[169,187,361,374],"discovery":[170,188,357,375],"research.":[171],"These":[172,278],"modification":[174],"these":[176,306,367],"also":[183],"research":[189,358,376],"members":[191],"enzyme":[194],"as":[196,251,268,270,344,379],"target":[197,381],"protein(s)":[198],"[4].":[199],"Here,":[200],"we":[201],"demonstrate":[202],"usage":[204],"sialylmotifs":[210,216],"sialyltransferases.":[212],"presence":[214],"cardinal":[219],"feature":[220],"mammalian":[222,330],"sialyltransferases":[223],"[5],":[224],"group":[226,239],"enzymes":[228],"transfers":[230],"sialic":[231],"acid":[232,247],"CMP-NeuAc":[234],"terminal":[237],"carbohydrates":[238],"various":[241],"glycoproteins":[242],"glycolipids":[244],"[6].":[245],"Sialic":[246],"recognized":[250],"key":[253],"determinant":[254],"diverse":[257,269],"oligosaccharide":[258],"structures":[259],"involved":[260,288],"large":[263],"variety":[264],"biological":[266],"events":[267],"animal":[271],"cell-cell":[272],"interaction":[273],"oncogenic":[275],"transformation":[276],"[7].":[277],"conserved":[279],"domains,":[281],"sialylmotifs,":[282],"have":[283],"shown":[285,311],"binding":[290],"either":[291],"donor":[293],"or":[294,297],"acceptor":[295],"substrates":[296],"both":[298,349],"[8,":[299],"9],":[300],"disulfide":[303],"linkage":[304],"between":[305],"two":[307],"essential":[314],"catalytic":[316,346],"activity":[317],"[10,":[318],"11].":[319],"Protein":[320],"sequence":[321],"[12]":[322],"structural":[324],"[11,":[326],"13]":[327],"showed":[328],"sialyltransferase":[331,378],"no":[333],"similarities":[334],"bacterial":[337],"enzymes,":[338],"although":[339],"His":[341],"residue":[342],"serves":[343],"center":[347],"[11].":[350],"provides":[352],"unique":[354],"opportunity":[355],"on":[359],"potential":[360],"development.":[362],"thorough":[364],"now":[370],"study":[372],"protein.":[382],"Such":[383],"demanding":[385],"high-performance":[386],"computing":[387],"power":[388]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
