{"id":"https://openalex.org/W2024589342","doi":"https://doi.org/10.1145/1854776.1854869","title":"Process calculi for systems biology","display_name":"Process calculi for systems biology","publication_year":2010,"publication_date":"2010-08-02","ids":{"openalex":"https://openalex.org/W2024589342","doi":"https://doi.org/10.1145/1854776.1854869","mag":"2024589342"},"language":"en","primary_location":{"id":"doi:10.1145/1854776.1854869","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854869","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042718259","display_name":"Caroline Baroukh","orcid":"https://orcid.org/0000-0002-1041-1730"},"institutions":[{"id":"https://openalex.org/I4210109636","display_name":"NIHR Imperial Biomedical Research Centre","ror":"https://ror.org/01kmhx639","country_code":"GB","type":"facility","lineage":["https://openalex.org/I34931013","https://openalex.org/I4210109636"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Caroline Baroukh","raw_affiliation_strings":["Imperial College London, London","Imperial College London, #N#London"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College London, London","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Imperial College London, #N#London","institution_ids":["https://openalex.org/I47508984","https://openalex.org/I4210109636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035077200","display_name":"Anthony Rowe","orcid":"https://orcid.org/0000-0003-1829-1179"},"institutions":[{"id":"https://openalex.org/I4210109636","display_name":"NIHR Imperial Biomedical Research Centre","ror":"https://ror.org/01kmhx639","country_code":"GB","type":"facility","lineage":["https://openalex.org/I34931013","https://openalex.org/I4210109636"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anthony Rowe","raw_affiliation_strings":["Imperial College London, London","Imperial College London, #N#London"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College London, London","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Imperial College London, #N#London","institution_ids":["https://openalex.org/I47508984","https://openalex.org/I4210109636"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045081171","display_name":"Yike Guo","orcid":"https://orcid.org/0000-0002-3075-2161"},"institutions":[{"id":"https://openalex.org/I4210109636","display_name":"NIHR Imperial Biomedical Research Centre","ror":"https://ror.org/01kmhx639","country_code":"GB","type":"facility","lineage":["https://openalex.org/I34931013","https://openalex.org/I4210109636"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yike Guo","raw_affiliation_strings":["Imperial College London, London","Imperial College London, #N#London"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College London, London","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Imperial College London, #N#London","institution_ids":["https://openalex.org/I47508984","https://openalex.org/I4210109636"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09293162,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"496","last_page":"497"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9771999716758728,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9675999879837036,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.6792992353439331},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6656676530838013},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6544908881187439},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4978625774383545},{"id":"https://openalex.org/keywords/process-modeling","display_name":"Process modeling","score":0.49331703782081604},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4247277081012726},{"id":"https://openalex.org/keywords/business-process-discovery","display_name":"Business process discovery","score":0.4149629771709442},{"id":"https://openalex.org/keywords/work-in-process","display_name":"Work in process","score":0.4042384624481201},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36491259932518005},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3568878173828125},{"id":"https://openalex.org/keywords/business-process-modeling","display_name":"Business process modeling","score":0.1792297065258026},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17865660786628723},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.14168661832809448},{"id":"https://openalex.org/keywords/business-process","display_name":"Business process","score":0.05763790011405945}],"concepts":[{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.6792992353439331},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6656676530838013},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6544908881187439},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4978625774383545},{"id":"https://openalex.org/C76956256","wikidata":"https://www.wikidata.org/wiki/Q27610560","display_name":"Process modeling","level":3,"score":0.49331703782081604},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4247277081012726},{"id":"https://openalex.org/C93453677","wikidata":"https://www.wikidata.org/wiki/Q1017580","display_name":"Business process discovery","level":5,"score":0.4149629771709442},{"id":"https://openalex.org/C174998907","wikidata":"https://www.wikidata.org/wiki/Q357662","display_name":"Work in process","level":2,"score":0.4042384624481201},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36491259932518005},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3568878173828125},{"id":"https://openalex.org/C207505557","wikidata":"https://www.wikidata.org/wiki/Q4374012","display_name":"Business process modeling","level":4,"score":0.1792297065258026},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17865660786628723},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.14168661832809448},{"id":"https://openalex.org/C85345410","wikidata":"https://www.wikidata.org/wiki/Q851587","display_name":"Business process","level":3,"score":0.05763790011405945},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/1854776.1854869","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1854776.1854869","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-02751394v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02751394","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ACM International Conference on Bioinformatics and Computational Biology, 2010, Niagara Falls, United States. ⟨10.1145/1854776.1854869⟩","raw_type":"Conference papers"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-122871","is_oa":false,"landing_page_url":"http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=&rft.volume=&rft.issue=&rft.date=2010&rft.spage=496&rft.aulast=Baroukh&rft.aufirst=&rft.atitle=Process+Calculi+for+systems+biology&rft.title=2010+ACM+International+Conference+on+Bioinformatics+and+Computational+Biology%2C+ACM-BCB+2010","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1587845087","https://openalex.org/W1983350265","https://openalex.org/W2104991267","https://openalex.org/W2118835619","https://openalex.org/W2171501814"],"related_works":["https://openalex.org/W3172074448","https://openalex.org/W2158991459","https://openalex.org/W3184122949","https://openalex.org/W2142618121","https://openalex.org/W3091896359","https://openalex.org/W2604360691","https://openalex.org/W2608662023","https://openalex.org/W2049769808","https://openalex.org/W3036996282","https://openalex.org/W88310037"],"abstract_inverted_index":{"In":[0],"this":[1],"poster":[2],"we":[3,51,55],"summarise":[4],"our":[5],"current":[6],"work":[7],"on":[8],"using":[9,57],"Process":[10,38],"Calculi":[11,39],"for":[12,44],"the":[13,36,45,53],"modelling":[14,46],"and":[15,29],"analysis":[16],"of":[17,22,33,35,47],"biological":[18,48],"pathways":[19],"in":[20,65],"context":[21],"better":[23],"understanding":[24],"respiratory":[25,66],"disease.":[26,67],"We":[27],"present":[28],"highlight":[30],"key":[31],"features":[32],"some":[34],"different":[37],"that":[40],"have":[41],"been":[42],"used":[43],"pathways.":[49],"Finally":[50],"describe":[52],"process":[54],"are":[56],"to":[58],"define":[59],"pathway":[60],"models":[61],"identified":[62],"as":[63],"important":[64]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}