{"id":"https://openalex.org/W1968563863","doi":"https://doi.org/10.1145/1839764.1839774","title":"Stochasticity in reactions","display_name":"Stochasticity in reactions","publication_year":2010,"publication_date":"2010-09-29","ids":{"openalex":"https://openalex.org/W1968563863","doi":"https://doi.org/10.1145/1839764.1839774","mag":"1968563863"},"language":"en","primary_location":{"id":"doi:10.1145/1839764.1839774","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1839764.1839774","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th International Conference on Computational Methods in Systems Biology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036809473","display_name":"Sven Twardziok","orcid":"https://orcid.org/0000-0002-0326-5704"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Sven Twardziok","raw_affiliation_strings":["Charit\u00e9 Berlin, Institute for Microbiology and Bioinformatics, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Charit\u00e9 Berlin, Institute for Microbiology and Bioinformatics, Berlin, Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038737222","display_name":"Heike Siebert","orcid":"https://orcid.org/0000-0002-8962-1107"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Heike Siebert","raw_affiliation_strings":["Freie Universit\u00e4t Berlin, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Freie Universit\u00e4t Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016212938","display_name":"Alexander Heyl","orcid":"https://orcid.org/0000-0002-8782-1260"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Heyl","raw_affiliation_strings":["Freie Universit\u00e4t Berlin, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Freie Universit\u00e4t Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5036809473"],"corresponding_institution_ids":["https://openalex.org/I7877124"],"apc_list":null,"apc_paid":null,"fwci":0.3965,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.60622553,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"76","last_page":"85"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rotation-formalisms-in-three-dimensions","display_name":"Rotation formalisms in three dimensions","score":0.793326199054718},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7351433634757996},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.6503644585609436},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5861791372299194},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.5409797430038452},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.46274831891059875},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.28019845485687256},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.27071458101272583},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.24637570977210999},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1961095631122589}],"concepts":[{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.793326199054718},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7351433634757996},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.6503644585609436},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5861791372299194},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.5409797430038452},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.46274831891059875},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.28019845485687256},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.27071458101272583},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.24637570977210999},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1961095631122589},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1839764.1839774","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1839764.1839774","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th International Conference on Computational Methods in Systems Biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1722998888","https://openalex.org/W1967508425","https://openalex.org/W1988383139","https://openalex.org/W2001659245","https://openalex.org/W2022624450","https://openalex.org/W2026888821","https://openalex.org/W2035850212","https://openalex.org/W2048152443","https://openalex.org/W2065782501","https://openalex.org/W2088410574","https://openalex.org/W2096195756","https://openalex.org/W2104314673","https://openalex.org/W2105291362","https://openalex.org/W2150981451","https://openalex.org/W2156091616","https://openalex.org/W2160533336","https://openalex.org/W2985222929","https://openalex.org/W4298421324","https://openalex.org/W4388252848"],"related_works":["https://openalex.org/W2061420542","https://openalex.org/W2952249082","https://openalex.org/W2949818316","https://openalex.org/W2004465018","https://openalex.org/W2074343215","https://openalex.org/W4283799632","https://openalex.org/W4300799685","https://openalex.org/W1967979976","https://openalex.org/W1979038995","https://openalex.org/W2906859405"],"abstract_inverted_index":{"Boolean":[0,26,40],"modeling":[1],"frameworks":[2],"have":[3],"long":[4],"since":[5],"proved":[6],"their":[7],"worth":[8],"for":[9],"capturing":[10],"and":[11,74],"analyzing":[12],"essential":[13],"characteristics":[14],"of":[15,25,80,90],"complex":[16],"systems.":[17],"Hybrid":[18],"approaches":[19],"aim":[20],"at":[21],"exploiting":[22],"the":[23,76,88],"advantages":[24],"formalisms":[27],"while":[28],"refining":[29],"expressiveness.":[30],"In":[31],"this":[32,70],"paper,":[33],"we":[34,72],"present":[35],"a":[36,50,53,66,84],"formalism":[37],"that":[38],"augments":[39],"models":[41],"with":[42,58,83],"stochastic":[43],"aspects.":[44],"More":[45],"specifically,":[46],"biological":[47],"reactions":[48],"effecting":[49],"system":[51],"in":[52,61],"given":[54],"state":[55],"are":[56],"associated":[57],"probabilities,":[59],"resulting":[60],"dynamical":[62],"behavior":[63],"represented":[64],"as":[65],"Markov":[67],"chain.":[68],"Using":[69],"approach,":[71],"model":[73],"analyze":[75],"cytokinin":[77],"response":[78],"network":[79],"Arabidopsis":[81],"thaliana":[82],"focus":[85],"on":[86],"clarifying":[87],"character":[89],"an":[91],"important":[92],"feedback":[93],"mechanism.":[94]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
