{"id":"https://openalex.org/W1978811916","doi":"https://doi.org/10.1145/1839764.1839765","title":"From species to pathway and tissue as process","display_name":"From species to pathway and tissue as process","publication_year":2010,"publication_date":"2010-09-29","ids":{"openalex":"https://openalex.org/W1978811916","doi":"https://doi.org/10.1145/1839764.1839765","mag":"1978811916"},"language":"en","primary_location":{"id":"doi:10.1145/1839764.1839765","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1839764.1839765","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th International Conference on Computational Methods in Systems Biology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015862123","display_name":"Muffy Calder","orcid":"https://orcid.org/0000-0001-5033-7232"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Muffy Calder","raw_affiliation_strings":["University of Glasgow, Glasgow, Scotland"],"affiliations":[{"raw_affiliation_string":"University of Glasgow, Glasgow, Scotland","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051177967","display_name":"Oana Andrei","orcid":"https://orcid.org/0000-0002-1306-0219"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Oana Andrei","raw_affiliation_strings":["University of Glasgow, Glasgow, Scotland"],"affiliations":[{"raw_affiliation_string":"University of Glasgow, Glasgow, Scotland","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013465452","display_name":"Andrea Degasperi","orcid":"https://orcid.org/0000-0001-6879-0596"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrea Degasperi","raw_affiliation_strings":["University of Glasgow, Glasgow, Scotland"],"affiliations":[{"raw_affiliation_string":"University of Glasgow, Glasgow, Scotland","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071721902","display_name":"Robin Donaldson","orcid":null},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robin Donaldson","raw_affiliation_strings":["University of Glasgow, Glasgow, Scotland"],"affiliations":[{"raw_affiliation_string":"University of Glasgow, Glasgow, Scotland","institution_ids":["https://openalex.org/I7882870"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5015862123"],"corresponding_institution_ids":["https://openalex.org/I7882870"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06060115,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10142","display_name":"Formal Methods in Verification","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9585999846458435,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.7153259515762329},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.6795858144760132},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6724722385406494},{"id":"https://openalex.org/keywords/process-calculus","display_name":"Process calculus","score":0.6292409896850586},{"id":"https://openalex.org/keywords/stochastic-process","display_name":"Stochastic process","score":0.5428417325019836},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5175225734710693},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4380800724029541},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3241831660270691},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2520591914653778},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14928534626960754}],"concepts":[{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.7153259515762329},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.6795858144760132},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6724722385406494},{"id":"https://openalex.org/C161771561","wikidata":"https://www.wikidata.org/wiki/Q1970286","display_name":"Process calculus","level":2,"score":0.6292409896850586},{"id":"https://openalex.org/C8272713","wikidata":"https://www.wikidata.org/wiki/Q176737","display_name":"Stochastic process","level":2,"score":0.5428417325019836},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5175225734710693},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4380800724029541},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3241831660270691},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2520591914653778},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14928534626960754},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1839764.1839765","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1839764.1839765","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th International Conference on Computational Methods in Systems Biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.7099999785423279,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2955406896","display_name":null,"funder_award_id":"EP/E032745/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1587845087","https://openalex.org/W1602280388","https://openalex.org/W1983350265","https://openalex.org/W2007006124","https://openalex.org/W2129095525","https://openalex.org/W2130429899","https://openalex.org/W2134991157","https://openalex.org/W2144082908","https://openalex.org/W2154594741","https://openalex.org/W2155418451","https://openalex.org/W2606231744"],"related_works":["https://openalex.org/W2045155990","https://openalex.org/W4313163053","https://openalex.org/W4300973204","https://openalex.org/W2132217355","https://openalex.org/W2170466294","https://openalex.org/W2123111774","https://openalex.org/W1511004497","https://openalex.org/W2142005831","https://openalex.org/W2014322972","https://openalex.org/W1599162377"],"abstract_inverted_index":{"Process":[0],"algebras":[1],"were":[2],"originally":[3],"designed":[4],"for":[5],"modelling":[6,20],"concurrent":[7],"computations.":[8],"Over":[9],"the":[10],"last":[11],"decade,":[12],"computer":[13],"scientists":[14],"have":[15],"explored":[16],"their":[17],"application":[18],"to":[19],"bio-molecular":[21],"processes,":[22],"with":[23,53],"considerable":[24],"success.":[25],"A":[26],"predominant":[27],"abstraction":[28],"is":[29,40,49],"molecule-as-process":[30],"[RSS01,":[31],"Car08],":[32],"where":[33],"each":[34],"process":[35],"represents":[36],"a":[37,45,50],"molecule.":[38],"Analysis":[39],"by":[41,58],"simulation":[42,55],"and":[43],"in":[44],"stochastic":[46,54],"setting,":[47],"there":[48],"clear":[51],"correspondence":[52],"as":[56],"proposed":[57],"Gillespie":[59],"[Gil77].":[60]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
