{"id":"https://openalex.org/W2051822311","doi":"https://doi.org/10.1145/1394042.1394079","title":"Applications of the gr\u00f6bner fan to gene network reconstruction (abstract only)","display_name":"Applications of the gr\u00f6bner fan to gene network reconstruction (abstract only)","publication_year":2008,"publication_date":"2008-07-25","ids":{"openalex":"https://openalex.org/W2051822311","doi":"https://doi.org/10.1145/1394042.1394079","mag":"2051822311"},"language":"en","primary_location":{"id":"doi:10.1145/1394042.1394079","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1394042.1394079","pdf_url":null,"source":{"id":"https://openalex.org/S176185422","display_name":"ACM communications in computer algebra","issn_l":"1932-2232","issn":["1932-2232","1932-2240"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320725","host_organization_name":"SIGSAM","host_organization_lineage":["https://openalex.org/P4310320725"],"host_organization_lineage_names":["SIGSAM"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Communications in Computer Algebra","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101676105","display_name":"Elena Dimitrova","orcid":"https://orcid.org/0000-0002-9805-5987"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elena S. Dimitrova","raw_affiliation_strings":["Clemson University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clemson University","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048180149","display_name":"Brandilyn Stigler","orcid":"https://orcid.org/0000-0001-7000-9543"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brandilyn Stigler","raw_affiliation_strings":["The Ohio State University","the Ohio State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Ohio State University","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"the Ohio State University","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083154892","display_name":"Abdul Salam Jarrah","orcid":"https://orcid.org/0000-0001-6771-2561"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abdul Salam Jarrah","raw_affiliation_strings":["Virginia Tech"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Tech","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091010756","display_name":"Reinhard Laubenbacher","orcid":"https://orcid.org/0000-0002-9143-9451"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Reinhard Laubenbacher","raw_affiliation_strings":["Virginia Tech"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Tech","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10174728,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":"1-2","first_page":"69","last_page":"69"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11435","display_name":"Polynomial and algebraic computation","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11435","display_name":"Polynomial and algebraic computation","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10142","display_name":"Formal Methods in Verification","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11697","display_name":"Numerical Methods and Algorithms","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gr\u00f6bner-basis","display_name":"Gr\u00f6bner basis","score":0.6282971501350403},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.5733357667922974},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.49776437878608704},{"id":"https://openalex.org/keywords/algebraic-geometry","display_name":"Algebraic geometry","score":0.47275835275650024},{"id":"https://openalex.org/keywords/equivalence","display_name":"Equivalence (formal languages)","score":0.4561854898929596},{"id":"https://openalex.org/keywords/basis","display_name":"Basis (linear algebra)","score":0.454723984003067},{"id":"https://openalex.org/keywords/polynomial","display_name":"Polynomial","score":0.44559386372566223},{"id":"https://openalex.org/keywords/commutative-property","display_name":"Commutative property","score":0.4313790202140808},{"id":"https://openalex.org/keywords/algebraic-number","display_name":"Algebraic number","score":0.42088407278060913},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.4148898124694824},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.3641190826892853},{"id":"https://openalex.org/keywords/algebra-over-a-field","display_name":"Algebra over a field","score":0.3526604175567627},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.29508113861083984},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.27973800897598267},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.2573724389076233},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.10171082615852356}],"concepts":[{"id":"https://openalex.org/C198082693","wikidata":"https://www.wikidata.org/wiki/Q1551631","display_name":"Gr\u00f6bner basis","level":3,"score":0.6282971501350403},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.5733357667922974},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.49776437878608704},{"id":"https://openalex.org/C68363185","wikidata":"https://www.wikidata.org/wiki/Q180969","display_name":"Algebraic geometry","level":2,"score":0.47275835275650024},{"id":"https://openalex.org/C2780069185","wikidata":"https://www.wikidata.org/wiki/Q7977945","display_name":"Equivalence (formal languages)","level":2,"score":0.4561854898929596},{"id":"https://openalex.org/C12426560","wikidata":"https://www.wikidata.org/wiki/Q189569","display_name":"Basis (linear algebra)","level":2,"score":0.454723984003067},{"id":"https://openalex.org/C90119067","wikidata":"https://www.wikidata.org/wiki/Q43260","display_name":"Polynomial","level":2,"score":0.44559386372566223},{"id":"https://openalex.org/C183778304","wikidata":"https://www.wikidata.org/wiki/Q165474","display_name":"Commutative property","level":2,"score":0.4313790202140808},{"id":"https://openalex.org/C9376300","wikidata":"https://www.wikidata.org/wiki/Q168817","display_name":"Algebraic number","level":2,"score":0.42088407278060913},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.4148898124694824},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.3641190826892853},{"id":"https://openalex.org/C136119220","wikidata":"https://www.wikidata.org/wiki/Q1000660","display_name":"Algebra over a field","level":2,"score":0.3526604175567627},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.29508113861083984},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.27973800897598267},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.2573724389076233},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.10171082615852356},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/1394042.1394079","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1394042.1394079","pdf_url":null,"source":{"id":"https://openalex.org/S176185422","display_name":"ACM communications in computer algebra","issn_l":"1932-2232","issn":["1932-2232","1932-2240"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320725","host_organization_name":"SIGSAM","host_organization_lineage":["https://openalex.org/P4310320725"],"host_organization_lineage_names":["SIGSAM"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Communications in Computer Algebra","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5299999713897705,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2156992204","https://openalex.org/W2580644455","https://openalex.org/W2099522902","https://openalex.org/W1973275916","https://openalex.org/W4249661809","https://openalex.org/W4246177694","https://openalex.org/W284213947","https://openalex.org/W2063665913","https://openalex.org/W2998082956","https://openalex.org/W293719221"],"abstract_inverted_index":{"Gr\u00f6bner":[0,16,27,95,107,113,149],"fans":[1,28,108,150],"have":[2,29],"gained":[3],"popularity":[4],"in":[5,161,169],"computational":[6],"commutative":[7],"algebra":[8],"and":[9,60,137,166],"algebraic":[10],"geometry":[11],"with":[12,90],"applications":[13],"ranging":[14],"from":[15,42],"basis":[17],"conversion":[18],"to":[19,92,153],"the":[20,33,52,61,69,73,86,101,110,126,134,162,170],"emerging":[21],"field":[22],"of":[23,35,54,63,75,88,103,112,122,125,133,139],"tropical":[24],"mathematics.":[25],"Recently":[26],"been":[30],"employed":[31],"for":[32],"selection":[34],"minimal":[36,79],"models":[37],"that":[38,66,71],"fit":[39],"measurement":[40],"data":[41,76],"gene":[43,156],"regulatory":[44,157],"networks.":[45],"The":[46],"model":[47,80,127,135],"space":[48,136],"is":[49,98],"described":[50],"as":[51,123],"sum":[53],"an":[55],"interpolating":[56],"polynomial":[57],"function":[58],"f":[59,89],"set":[62,111],"all":[64],"polynomials":[65],"vanish":[67],"on":[68,100],"data,":[70],"is,":[72],"ideal":[74],"points.":[77],"A":[78],"can":[81,119],"be":[82,120],"chosen":[83],"by":[84],"computing":[85],"reduction":[87],"respect":[91],"a":[93],"fixed":[94],"basis,":[96],"which":[97],"dependent":[99],"choice":[102],"term":[104],"order.":[105],"As":[106],"partition":[109],"bases":[114],"into":[115],"equivalence":[116],"classes,":[117],"they":[118],"thought":[121],"parametrizations":[124],"space.":[128],"This":[129],"characterization":[130],"permits":[131],"exploration":[132],"discovery":[138],"\"most":[140],"likely\"":[141],"models.":[142],"In":[143],"this":[144],"poster":[145],"we":[146],"show":[147],"how":[148],"are":[151],"used":[152],"two":[154],"reconstruct":[155],"networks:":[158],"lactose":[159],"metabolism":[160],"bacterium":[163],"E.":[164],"coli":[165],"tissue":[167],"development":[168],"roundworm":[171],"C.":[172],"elegans.":[173]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
