{"id":"https://openalex.org/W2143564696","doi":"https://doi.org/10.1145/584792.584905","title":"A system for knowledge management in bioinformatics","display_name":"A system for knowledge management in bioinformatics","publication_year":2002,"publication_date":"2002-11-04","ids":{"openalex":"https://openalex.org/W2143564696","doi":"https://doi.org/10.1145/584792.584905","mag":"2143564696"},"language":"en","primary_location":{"id":"doi:10.1145/584792.584905","is_oa":false,"landing_page_url":"https://doi.org/10.1145/584792.584905","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the eleventh international conference on Information and knowledge management","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109083943","display_name":"Sudeshna Adak","orcid":null},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]},{"id":"https://openalex.org/I4210103279","display_name":"IBM Research - India","ror":"https://ror.org/014wt7r80","country_code":"IN","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210103279","https://openalex.org/I4210114115"]}],"countries":["IN","US"],"is_corresponding":true,"raw_author_name":"Sudeshna Adak","raw_affiliation_strings":["IBM India Research Laboratory, New Delhi, India","IBM India Research Laboratory, New Delhi, India#TAB#"],"affiliations":[{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India","institution_ids":["https://openalex.org/I4210103279"]},{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India#TAB#","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085803049","display_name":"Vishal Batra","orcid":"https://orcid.org/0000-0002-5583-7743"},"institutions":[{"id":"https://openalex.org/I4210103279","display_name":"IBM Research - India","ror":"https://ror.org/014wt7r80","country_code":"IN","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210103279","https://openalex.org/I4210114115"]},{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Vishal S. Batra","raw_affiliation_strings":["IBM India Research Laboratory, New Delhi, India","IBM India Research Laboratory, New Delhi, India#TAB#"],"affiliations":[{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India","institution_ids":["https://openalex.org/I4210103279"]},{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India#TAB#","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110246784","display_name":"Deo N. Bhardwaj","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103279","display_name":"IBM Research - India","ror":"https://ror.org/014wt7r80","country_code":"IN","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210103279","https://openalex.org/I4210114115"]},{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Deo N. Bhardwaj","raw_affiliation_strings":["IBM India Research Laboratory, New Delhi, India","IBM India Research Laboratory, New Delhi, India#TAB#"],"affiliations":[{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India","institution_ids":["https://openalex.org/I4210103279"]},{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India#TAB#","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031739761","display_name":"Pasumarti V. Kamesam","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103279","display_name":"IBM Research - India","ror":"https://ror.org/014wt7r80","country_code":"IN","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210103279","https://openalex.org/I4210114115"]},{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"P. V. Kamesam","raw_affiliation_strings":["IBM India Research Laboratory, New Delhi, India","IBM India Research Laboratory, New Delhi, India#TAB#"],"affiliations":[{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India","institution_ids":["https://openalex.org/I4210103279"]},{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India#TAB#","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069954994","display_name":"Pankaj Kankar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103279","display_name":"IBM Research - India","ror":"https://ror.org/014wt7r80","country_code":"IN","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210103279","https://openalex.org/I4210114115"]},{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Pankaj Kankar","raw_affiliation_strings":["IBM India Research Laboratory, New Delhi, India","IBM India Research Laboratory, New Delhi, India#TAB#"],"affiliations":[{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India","institution_ids":["https://openalex.org/I4210103279"]},{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India#TAB#","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065764073","display_name":"Manish P. Kurhekar","orcid":"https://orcid.org/0000-0002-6409-3280"},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]},{"id":"https://openalex.org/I4210103279","display_name":"IBM Research - India","ror":"https://ror.org/014wt7r80","country_code":"IN","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210103279","https://openalex.org/I4210114115"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Manish P. Kurhekar","raw_affiliation_strings":["IBM India Research Laboratory, New Delhi, India","IBM India Research Laboratory, New Delhi, India#TAB#"],"affiliations":[{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India","institution_ids":["https://openalex.org/I4210103279"]},{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India#TAB#","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051577973","display_name":"Biplav Srivastava","orcid":"https://orcid.org/0000-0002-7292-3838"},"institutions":[{"id":"https://openalex.org/I4210103279","display_name":"IBM Research - India","ror":"https://ror.org/014wt7r80","country_code":"IN","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210103279","https://openalex.org/I4210114115"]},{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Biplav Srivastava","raw_affiliation_strings":["IBM India Research Laboratory, New Delhi, India","IBM India Research Laboratory, New Delhi, India#TAB#"],"affiliations":[{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India","institution_ids":["https://openalex.org/I4210103279"]},{"raw_affiliation_string":"IBM India Research Laboratory, New Delhi, India#TAB#","institution_ids":["https://openalex.org/I1341412227"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5109083943"],"corresponding_institution_ids":["https://openalex.org/I1341412227","https://openalex.org/I4210103279"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.10976956,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"638","last_page":"641"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9735000133514404,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6843334436416626},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3499652147293091},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34133464097976685},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16285169124603271}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6843334436416626},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3499652147293091},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34133464097976685},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16285169124603271}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/584792.584905","is_oa":false,"landing_page_url":"https://doi.org/10.1145/584792.584905","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the eleventh international conference on Information and knowledge management","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1483363854","https://openalex.org/W1495627115","https://openalex.org/W1983594585","https://openalex.org/W2000522196","https://openalex.org/W2031752690","https://openalex.org/W2094010958","https://openalex.org/W2094258495","https://openalex.org/W2115772919","https://openalex.org/W2150926065","https://openalex.org/W2161666572","https://openalex.org/W2161893150"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"The":[0],"emerging":[1],"biochip":[2,37],"technology":[3],"has":[4],"made":[5],"it":[6,40,113],"possible":[7],"to":[8,30,45,52,120,127,141],"simultaneously":[9],"study":[10],"expression":[11,145],"(activity":[12],"level)":[13],"of":[14,16,59,97,105],"thousands":[15],"genes":[17],"or":[18,88,149],"proteins":[19],"in":[20,24,28,64,74,81,102,147,168],"a":[21,75,93,139,151],"single":[22],"experiment":[23],"the":[25,36,47,86,103,128],"laboratory.":[26],"However,":[27],"order":[29],"extract":[31],"relevant":[32,164],"biological":[33,66,89,100],"knowledge":[34,79,158],"from":[35,150,173,177,182],"experimental":[38,48],"data,":[39,49],"is":[41],"critical":[42],"not":[43],"only":[44],"analyze":[46,142],"but":[50],"also":[51],"cross-reference":[53],"and":[54,123,156,179],"correlate":[55],"these":[56],"large":[57],"volumes":[58],"data":[60,117,122,146,166,172,176,181],"with":[61],"information":[62],"available":[63],"external":[65],"databases":[67],"accessible":[68],"online.":[69],"We":[70,131],"address":[71],"this":[72],"problem":[73],"comprehensive":[76],"system":[77],"for":[78],"management":[80],"bioinformatics":[82],"called":[83,109],"e2e.":[84],"To":[85],"biologist":[87,140],"applications,":[90],"e2e":[91,135],"exposes":[92],"common":[94],"semantic":[95,129],"view":[96],"inter-relationship":[98],"among":[99],"concepts":[101],"form":[104],"an":[106,134],"XML":[107],"representation":[108],"eXpressML,":[110],"while":[111],"internally,":[112],"can":[114],"use":[115],"any":[116],"integration":[118],"solution":[119],"retrieve":[121],"return":[124],"results":[125],"corresponding":[126],"view.":[130],"have":[132],"implemented":[133],"prototype":[136],"that":[137],"enables":[138],"her":[143],"gene":[144],"GEML":[148],"public":[152],"site":[153],"like":[154,161],"Stanford,":[155],"discover":[157],"through":[159],"operations":[160],"querying":[162],"on":[163],"annotated":[165],"represented":[167],"eXpressML":[169],"using":[170],"pathways":[171],"KEGG,":[174],"publication":[175],"Medline":[178],"protein":[180],"SWISS-PROT.":[183]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
