{"id":"https://openalex.org/W7171568348","doi":"https://doi.org/10.1145/3807503.3819501","title":"Feasible radiomics workflow for the zebrafish model: a preliminary study","display_name":"Feasible radiomics workflow for the zebrafish model: a preliminary study","publication_year":2026,"publication_date":"2026-06-30","ids":{"openalex":"https://openalex.org/W7171568348","doi":"https://doi.org/10.1145/3807503.3819501"},"language":null,"primary_location":{"id":"doi:10.1145/3807503.3819501","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819501","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3807503.3819501","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023090551","display_name":"Alessandro Stefano","orcid":"https://orcid.org/0000-0002-7189-1731"},"institutions":[{"id":"https://openalex.org/I4210095629","display_name":"Institute of Molecular Bioimaging and Physiology","ror":"https://ror.org/00s2j5046","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210095629","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Stefano","raw_affiliation_strings":["Institute of Bioimaging and Complex Biological Systems, National Research Council (IBSBC-CNR), Cefal\u00f9, Italy"],"raw_orcid":"https://orcid.org/0000-0002-7189-1731","affiliations":[{"raw_affiliation_string":"Institute of Bioimaging and Complex Biological Systems, National Research Council (IBSBC-CNR), Cefal\u00f9, Italy","institution_ids":["https://openalex.org/I4210095629"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115088681","display_name":"Nicol\u00f2 Lauciello","orcid":null},"institutions":[{"id":"https://openalex.org/I900890020","display_name":"University of Palermo","ror":"https://ror.org/044k9ta02","country_code":"IT","type":"education","lineage":["https://openalex.org/I900890020"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Nicol\u00f2 Lauciello","raw_affiliation_strings":["Department of Earth and Marine Sciences, University ofPalermo, Palermo, Italy"],"raw_orcid":"https://orcid.org/0009-0001-4773-6053","affiliations":[{"raw_affiliation_string":"Department of Earth and Marine Sciences, University ofPalermo, Palermo, Italy","institution_ids":["https://openalex.org/I900890020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074362025","display_name":"Enrico Rizzo","orcid":null},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Enrico Rizzo","raw_affiliation_strings":["Department of Mechanical and Aerospace Engineering, University of Rome 'La Sapienza', Rome, Italy"],"raw_orcid":"https://orcid.org/0009-0002-9183-888X","affiliations":[{"raw_affiliation_string":"Department of Mechanical and Aerospace Engineering, University of Rome 'La Sapienza', Rome, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024872723","display_name":"Gaia Pucci","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095629","display_name":"Institute of Molecular Bioimaging and Physiology","ror":"https://ror.org/00s2j5046","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210095629","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gaia Pucci","raw_affiliation_strings":["Institute of Bioimaging and Complex Biological Systems, National Research Council (IBSBC-CNR), Cefal\u00f9, Italy"],"raw_orcid":"https://orcid.org/0009-0003-2386-7256","affiliations":[{"raw_affiliation_string":"Institute of Bioimaging and Complex Biological Systems, National Research Council (IBSBC-CNR), Cefal\u00f9, Italy","institution_ids":["https://openalex.org/I4210095629"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008498339","display_name":"Giovanni Pasini","orcid":"https://orcid.org/0000-0002-8750-0731"},"institutions":[{"id":"https://openalex.org/I4210095629","display_name":"Institute of Molecular Bioimaging and Physiology","ror":"https://ror.org/00s2j5046","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210095629","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanni Pasini","raw_affiliation_strings":["Institute of Bioimaging and Complex Biological Systems, National Research Council (IBSBC-CNR), Cefal\u00f9, Italy"],"raw_orcid":"https://orcid.org/0000-0002-8750-0731","affiliations":[{"raw_affiliation_string":"Institute of Bioimaging and Complex Biological Systems, National Research Council (IBSBC-CNR), Cefal\u00f9, Italy","institution_ids":["https://openalex.org/I4210095629"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098963736","display_name":"Alessia Finti","orcid":"https://orcid.org/0009-0003-9658-7044"},"institutions":[{"id":"https://openalex.org/I4210095629","display_name":"Institute of Molecular Bioimaging and Physiology","ror":"https://ror.org/00s2j5046","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210095629","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessia Finti","raw_affiliation_strings":["Institute of Bioimaging and Complex Biological Systems, National Research Council (IBSBC-CNR), Cefal\u00f9, Italy"],"raw_orcid":"https://orcid.org/0009-0003-9658-7044","affiliations":[{"raw_affiliation_string":"Institute of Bioimaging and Complex Biological Systems, National Research Council (IBSBC-CNR), Cefal\u00f9, Italy","institution_ids":["https://openalex.org/I4210095629"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081150839","display_name":"Giusi Irma Forte","orcid":"https://orcid.org/0000-0003-0161-9828"},"institutions":[{"id":"https://openalex.org/I4210095629","display_name":"Institute of Molecular Bioimaging and Physiology","ror":"https://ror.org/00s2j5046","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210095629","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giusi Irma Forte","raw_affiliation_strings":["Institute of Bioimaging and Complex Biological Systems -National Research Council, Cefal\u00f9, Italy"],"raw_orcid":"https://orcid.org/0000-0003-0161-9828","affiliations":[{"raw_affiliation_string":"Institute of Bioimaging and Complex Biological Systems -National Research Council, Cefal\u00f9, Italy","institution_ids":["https://openalex.org/I4210095629"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024333391","display_name":"Franco Marinozzi","orcid":"https://orcid.org/0000-0002-4872-2980"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Franco Marinozzi","raw_affiliation_strings":["Department of Mechanical and Aerospace Engineering, University of Rome 'La Sapienza', Rome, Italy"],"raw_orcid":"https://orcid.org/0000-0002-4872-2980","affiliations":[{"raw_affiliation_string":"Department of Mechanical and Aerospace Engineering, University of Rome 'La Sapienza', Rome, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011638733","display_name":"G. Russo","orcid":"https://orcid.org/0000-0003-1493-1087"},"institutions":[{"id":"https://openalex.org/I4210095629","display_name":"Institute of Molecular Bioimaging and Physiology","ror":"https://ror.org/00s2j5046","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210095629","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giorgio Russo","raw_affiliation_strings":["Institute of Bioimaging and Complex Biological Systems, National Research Council (IBSBC-CNR), Cefal\u00f9, Italy"],"raw_orcid":"https://orcid.org/0000-0003-1493-1087","affiliations":[{"raw_affiliation_string":"Institute of Bioimaging and Complex Biological Systems, National Research Council (IBSBC-CNR), Cefal\u00f9, Italy","institution_ids":["https://openalex.org/I4210095629"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069478037","display_name":"Fabiano Bini","orcid":"https://orcid.org/0000-0002-5641-1189"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Fabiano Bini","raw_affiliation_strings":["Department of Mechanical and Aerospace Engineering, University of Rome 'La Sapienza', Rome, Italy"],"raw_orcid":"https://orcid.org/0000-0002-5641-1189","affiliations":[{"raw_affiliation_string":"Department of Mechanical and Aerospace Engineering, University of Rome 'La Sapienza', Rome, Italy","institution_ids":["https://openalex.org/I861853513"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7228000164031982},{"id":"https://openalex.org/keywords/radiomics","display_name":"Radiomics","score":0.529699981212616},{"id":"https://openalex.org/keywords/zebrafish","display_name":"Zebrafish","score":0.4007999897003174},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.2728999853134155},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.26489999890327454}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7228000164031982},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5910999774932861},{"id":"https://openalex.org/C2778559731","wikidata":"https://www.wikidata.org/wiki/Q23808793","display_name":"Radiomics","level":2,"score":0.529699981212616},{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.4007999897003174},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3626999855041504},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3052999973297119},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.2728999853134155},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.26489999890327454},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.22100000083446503},{"id":"https://openalex.org/C58328972","wikidata":"https://www.wikidata.org/wiki/Q184609","display_name":"Expert system","level":2,"score":0.21690000593662262}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3807503.3819501","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819501","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3807503.3819501","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819501","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W1909740415","https://openalex.org/W1995875735","https://openalex.org/W2052507258","https://openalex.org/W2113131123","https://openalex.org/W2128739912","https://openalex.org/W2150837319","https://openalex.org/W2158914083","https://openalex.org/W2174661749","https://openalex.org/W2332142064","https://openalex.org/W2415652191","https://openalex.org/W2554272155","https://openalex.org/W2604785265","https://openalex.org/W2899518570","https://openalex.org/W2900422713","https://openalex.org/W2980676854","https://openalex.org/W2998789541","https://openalex.org/W3000991698","https://openalex.org/W3011894004","https://openalex.org/W3014974815","https://openalex.org/W3025036301","https://openalex.org/W3095596562","https://openalex.org/W3158551825","https://openalex.org/W3161085427","https://openalex.org/W3196626243","https://openalex.org/W4212875960","https://openalex.org/W4282917602","https://openalex.org/W4283512560","https://openalex.org/W4292247643","https://openalex.org/W4324032824","https://openalex.org/W4327974600","https://openalex.org/W4387955477","https://openalex.org/W4389574046","https://openalex.org/W4394691410","https://openalex.org/W4399867841","https://openalex.org/W4400269311","https://openalex.org/W4400369502","https://openalex.org/W4401757767","https://openalex.org/W4404343057","https://openalex.org/W4409328055","https://openalex.org/W4409533233","https://openalex.org/W7140107422"],"related_works":[],"abstract_inverted_index":{"Radiomics":[0],"is":[1],"increasingly":[2],"applied":[3],"in":[4],"preclinical":[5,161],"imaging,":[6],"yet":[7],"its":[8],"adoption":[9],"remains":[10],"limited":[11],"by":[12],"operator-dependent":[13],"segmentation.":[14],"We":[15],"propose":[16],"a":[17,62],"semi-automated":[18],"segmentation":[19],"pipeline":[20],"tailored":[21],"to":[22,26,111],"the":[23,154],"zebrafish":[24],"model":[25],"enable":[27],"robust":[28],"and":[29,47,71,97,116,125,133],"scalable":[30],"radiomics":[31,142,158],"analysis.":[32],"A":[33,105],"dataset":[34],"of":[35,156],"320":[36],"images":[37],"acquired":[38],"at":[39],"72":[40],"hpf":[41],"from":[42],"two":[43],"irradiation":[44,149],"groups\u2014conventional":[45],"(CONV)":[46],"FLASH\u2014was":[48],"analyzed.":[49],"Five":[50],"anatomical":[51,134],"regions":[52],"(whole":[53],"body,":[54],"head,":[55],"tail,":[56],"eye,":[57],"heart)":[58],"were":[59],"segmented":[60],"using":[61,78,119],"hybrid":[63],"workflow":[64],"combining":[65],"edge":[66],"detection,":[67],"entropy":[68],"filtering,":[69],"denoising,":[70],"morphological":[72],"refinement.":[73],"Segmentation":[74],"performance":[75],"was":[76,108],"assessed":[77],"eight":[79],"quantitative":[80],"metrics:":[81],"Sensitivity,":[82],"Specificity,":[83],"Precision,":[84],"Accuracy,":[85],"Matthews":[86],"Correlation":[87],"Coefficient":[88,95],"(MCC),":[89],"Hausdorff":[90],"Distance":[91],"(HD),":[92],"Dice":[93],"Similarity":[94],"(DSC),":[96],"Jaccard":[98],"Index":[99],"(JI)":[100],"(see":[101],"supplementary":[102],"file":[103],"S1).":[104],"radiomics-based":[106],"classification":[107],"subsequently":[109],"performed":[110],"evaluate":[112],"discrimination":[113,146],"between":[114,148],"CONV":[115],"FLASH":[117],"conditions":[118],"Receiver":[120],"Operating":[121],"Characteristic":[122],"(ROC)":[123],"analysis":[124],"accuracy.":[126],"The":[127],"proposed":[128],"framework":[129],"achieved":[130],"high":[131],"reproducibility":[132],"consistency":[135],"while":[136],"significantly":[137],"reducing":[138],"manual":[139],"workload.":[140],"Extracted":[141],"features":[143],"showed":[144],"promising":[145],"capability":[147],"modalities.":[150],"These":[151],"findings":[152],"support":[153],"feasibility":[155],"integrating":[157],"into":[159],"zebrafish-based":[160],"research.":[162]},"counts_by_year":[],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2026-07-29T00:00:00"}
