{"id":"https://openalex.org/W7171538894","doi":"https://doi.org/10.1145/3807503.3819499","title":"SLAMR: LLM-Augmented Multimodal Learning for Cold-Start Synthetic Lethality Recommendation in Cancer Cell Lines","display_name":"SLAMR: LLM-Augmented Multimodal Learning for Cold-Start Synthetic Lethality Recommendation in Cancer Cell Lines","publication_year":2026,"publication_date":"2026-06-30","ids":{"openalex":"https://openalex.org/W7171538894","doi":"https://doi.org/10.1145/3807503.3819499"},"language":null,"primary_location":{"id":"doi:10.1145/3807503.3819499","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819499","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3807503.3819499","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101613198","display_name":"Siyu Tao","orcid":"https://orcid.org/0009-0006-6655-2483"},"institutions":[{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siyu Tao","raw_affiliation_strings":["School of Information Science and Technology, ShanghaiTech University, Shanghai, China and Lingang Laboratory, Shanghai, China"],"raw_orcid":"https://orcid.org/0009-0002-1139-487X","affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, ShanghaiTech University, Shanghai, China and Lingang Laboratory, Shanghai, China","institution_ids":["https://openalex.org/I30809798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5143780016","display_name":"Yingfan Rui","orcid":"https://orcid.org/0009-0007-9327-2257"},"institutions":[{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingfan Rui","raw_affiliation_strings":["School of Information Science and Technology, ShanghaiTech University, Shanghai, China"],"raw_orcid":"https://orcid.org/0009-0007-9327-2257","affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, ShanghaiTech University, Shanghai, China","institution_ids":["https://openalex.org/I30809798"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014529529","display_name":"Jie Zheng","orcid":"https://orcid.org/0000-0001-6774-9786"},"institutions":[{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Zheng","raw_affiliation_strings":["School of Information Science and Technology, ShanghaiTech University, Shanghai, China and Shanghai Engineering Research Center of Intelligent Vision and Imaging, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0001-6774-9786","affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, ShanghaiTech University, Shanghai, China and Shanghai Engineering Research Center of Intelligent Vision and Imaging, Shanghai, China","institution_ids":["https://openalex.org/I30809798"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I30809798"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/synthetic-lethality","display_name":"Synthetic lethality","score":0.6718000173568726},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.46619999408721924},{"id":"https://openalex.org/keywords/multimodal-therapy","display_name":"Multimodal therapy","score":0.44029998779296875},{"id":"https://openalex.org/keywords/cell-culture","display_name":"Cell culture","score":0.3926999866962433},{"id":"https://openalex.org/keywords/lethality","display_name":"Lethality","score":0.39259999990463257},{"id":"https://openalex.org/keywords/human-cell","display_name":"Human cell","score":0.32899999618530273}],"concepts":[{"id":"https://openalex.org/C2778502085","wikidata":"https://www.wikidata.org/wiki/Q7662767","display_name":"Synthetic lethality","level":4,"score":0.6718000173568726},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.46619999408721924},{"id":"https://openalex.org/C4441509","wikidata":"https://www.wikidata.org/wiki/Q6418787","display_name":"Multimodal therapy","level":2,"score":0.44029998779296875},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3946000039577484},{"id":"https://openalex.org/C81885089","wikidata":"https://www.wikidata.org/wiki/Q189082","display_name":"Cell culture","level":2,"score":0.3926999866962433},{"id":"https://openalex.org/C20379349","wikidata":"https://www.wikidata.org/wiki/Q1720706","display_name":"Lethality","level":2,"score":0.39259999990463257},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3675999939441681},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35280001163482666},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33739998936653137},{"id":"https://openalex.org/C2993684226","wikidata":"https://www.wikidata.org/wiki/Q2662727","display_name":"Human cell","level":3,"score":0.32899999618530273},{"id":"https://openalex.org/C2994372470","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell lines","level":4,"score":0.31850001215934753},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.3009999990463257},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2825999855995178},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.26820001006126404},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.2513999938964844}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3807503.3819499","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819499","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3807503.3819499","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819499","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1989006164","https://openalex.org/W2112349562","https://openalex.org/W2554763217","https://openalex.org/W2601016637","https://openalex.org/W2704159227","https://openalex.org/W2883377762","https://openalex.org/W3136918052","https://openalex.org/W3161372396","https://openalex.org/W3196686803","https://openalex.org/W4225820450","https://openalex.org/W4283773087","https://openalex.org/W4296775963","https://openalex.org/W4313890362","https://openalex.org/W4316494586","https://openalex.org/W4327550249","https://openalex.org/W4387966385","https://openalex.org/W4402076683","https://openalex.org/W4403572618","https://openalex.org/W4407559048","https://openalex.org/W4409382759","https://openalex.org/W4409804355","https://openalex.org/W4410533547","https://openalex.org/W4414127565","https://openalex.org/W4416114057","https://openalex.org/W4416961375","https://openalex.org/W4417200381","https://openalex.org/W7117471838"],"related_works":[],"abstract_inverted_index":{"Synthetic":[0],"lethality":[1],"(SL)":[2],"offers":[3],"a":[4,36,94,114,149,168],"promising":[5],"strategy":[6,171],"for":[7,51,72,99,220],"precision":[8],"oncology":[9],"by":[10],"targeting":[11],"specific":[12,42,87,104,130],"genetic":[13],"vulnerabilities":[14],"in":[15,103,214],"tumor":[16],"cells.":[17],"Given":[18],"the":[19,25,62,109,157,205],"context-dependent":[20],"nature":[21],"of":[22,28,123],"SLs":[23],"and":[24,153,172],"high":[26],"cost":[27],"biological":[29,126],"validations,":[30],"it":[31],"is":[32,48,222],"essential":[33],"to":[34,68,81,86,119,163,210],"generate":[35,120],"precise":[37,83],"SL":[38,53,101,187],"candidate":[39,84,197],"ranking":[40],"within":[41],"contexts.":[43],"However,":[44],"achieving":[45],"this":[46],"goal":[47],"still":[49],"challenging":[50],"existing":[52],"prediction":[54],"models.":[55],"First,":[56],"these":[57,178],"methods":[58],"often":[59],"suffer":[60],"from":[61,148,156],"cold-start":[63,100,216],"problem,":[64],"as":[65],"they":[66],"struggle":[67],"learn":[69],"high-quality":[70],"embeddings":[71],"unseen":[73],"genes.":[74],"Moreover,":[75],"most":[76],"models":[77],"are":[78,135],"context-agnostic,":[79],"failing":[80],"tailor":[82],"rankings":[85],"cell":[88,105,131],"lines.":[89,106,132],"Here,":[90],"we":[91,143,185],"introduce":[92],"SLAMR,":[93],"multimodal":[95],"learning":[96],"framework":[97],"designed":[98],"recommendation":[102],"To":[107],"capture":[108],"cell-line-specific":[110],"dependencies,":[111],"SLAMR":[112,176,203,221],"leverages":[113],"large":[115],"language":[116,160],"model":[117,161],"(LLM)":[118],"text":[121],"summaries":[122,134],"each":[124],"gene\u2019s":[125],"features,":[127],"conditioned":[128],"on":[129],"These":[133],"subsequently":[136],"encoded":[137],"into":[138,180],"context-aware":[139],"gene":[140,165,182,193],"embeddings.":[141,183],"Furthermore,":[142],"integrate":[144],"structured":[145],"prior":[146],"knowledge":[147,151],"biomedical":[150],"graph":[152],"evolutionary":[154],"information":[155],"pre-trained":[158],"protein":[159],"ESM-2":[162],"enrich":[164],"representations.":[166],"Through":[167],"hybrid":[169],"fusion":[170],"cross-modal":[173],"contrastive":[174],"learning,":[175],"fuses":[177],"features":[179],"robust":[181],"Finally,":[184],"compute":[186],"scores":[188],"via":[189],"cosine":[190],"similarity":[191],"between":[192],"embeddings,":[194],"enabling":[195],"effective":[196],"prioritization.":[198],"Comprehensive":[199],"evaluations":[200],"demonstrate":[201],"that":[202],"achieves":[204],"overall":[206],"best":[207],"performance":[208],"compared":[209],"seven":[211],"state-of-the-art":[212],"baselines":[213],"various":[215],"scenarios.":[217],"Source":[218],"code":[219],"available":[223],"at":[224],"https://github.com/Rrrrachellll/SLAMR.":[225]},"counts_by_year":[],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2026-07-29T00:00:00"}
