{"id":"https://openalex.org/W7171540374","doi":"https://doi.org/10.1145/3807503.3819488","title":"Generic and Easy Method to Update Static Text Indexes","display_name":"Generic and Easy Method to Update Static Text Indexes","publication_year":2026,"publication_date":"2026-06-30","ids":{"openalex":"https://openalex.org/W7171540374","doi":"https://doi.org/10.1145/3807503.3819488"},"language":null,"primary_location":{"id":"doi:10.1145/3807503.3819488","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819488","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3807503.3819488","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000660681","display_name":"Jaros\u0142aw \u017bola","orcid":"https://orcid.org/0000-0002-1686-9697"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaroslaw Zola","raw_affiliation_strings":["University at Buffalo, Buffalo, NY, USA"],"raw_orcid":"https://orcid.org/0000-0002-1686-9697","affiliations":[{"raw_affiliation_string":"University at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5143761743","display_name":"Andrew J. Mikalsen","orcid":"https://orcid.org/0009-0004-5826-7434"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew J. Mikalsen","raw_affiliation_strings":["University at Buffalo, Buffalo, NY, USA"],"raw_orcid":"https://orcid.org/0009-0004-5826-7434","affiliations":[{"raw_affiliation_string":"University at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071826246","display_name":"Devendra Rana","orcid":null},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Devendra Rana","raw_affiliation_strings":["University at Buffalo, Buffalo, NY, USA"],"raw_orcid":"https://orcid.org/0009-0003-4326-9261","affiliations":[{"raw_affiliation_string":"University at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101871030","display_name":"Dong Xie","orcid":"https://orcid.org/0000-0003-4857-900X"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dong Xie","raw_affiliation_strings":["The Pennsylvania State University, University Park, PA, USA"],"raw_orcid":"https://orcid.org/0000-0003-4857-900X","affiliations":[{"raw_affiliation_string":"The Pennsylvania State University, University Park, PA, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048219741","display_name":"Douglas B. Rumbaugh","orcid":"https://orcid.org/0000-0002-9265-652X"},"institutions":[{"id":"https://openalex.org/I153151563","display_name":"Harrisburg University of Science and Technology","ror":"https://ror.org/02g0s4z48","country_code":"US","type":"education","lineage":["https://openalex.org/I153151563"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Douglas B. Rumbaugh","raw_affiliation_strings":["Harrisburg University of Science and Technology, Harrisburg, PA, USA"],"raw_orcid":"https://orcid.org/0000-0002-9265-652X","affiliations":[{"raw_affiliation_string":"Harrisburg University of Science and Technology, Harrisburg, PA, USA","institution_ids":["https://openalex.org/I153151563"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082679208","display_name":"Zhuoyue Zhao","orcid":"https://orcid.org/0000-0002-1631-718X"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhuoyue Zhao","raw_affiliation_strings":["University at Buffalo, Buffalo, NY, USA"],"raw_orcid":"https://orcid.org/0000-0002-1631-718X","affiliations":[{"raw_affiliation_string":"University at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.2935999929904938},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.29010000824928284},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.25609999895095825},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.2361000031232834},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.2295999974012375}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6355000138282776},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3650999963283539},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3285999894142151},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.30869999527931213},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.2935999929904938},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.29010000824928284},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.25609999895095825},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.2361000031232834},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.2295999974012375},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.2257000058889389}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3807503.3819488","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819488","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3807503.3819488","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819488","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4120289929","display_name":null,"funder_award_id":"IIS-2339596","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1968301997","https://openalex.org/W2010361633","https://openalex.org/W2075136957","https://openalex.org/W2087721273","https://openalex.org/W2134283755","https://openalex.org/W2152420937","https://openalex.org/W2158322625","https://openalex.org/W2767318416","https://openalex.org/W2809649683","https://openalex.org/W2889833303","https://openalex.org/W2951160681","https://openalex.org/W3113074526","https://openalex.org/W3185521398","https://openalex.org/W4205262153","https://openalex.org/W4220923634","https://openalex.org/W4247794781","https://openalex.org/W4282042973","https://openalex.org/W4382631632","https://openalex.org/W4386256230","https://openalex.org/W4401034109","https://openalex.org/W4402043159","https://openalex.org/W4402586425","https://openalex.org/W4404814486","https://openalex.org/W4409987191","https://openalex.org/W4411592013","https://openalex.org/W4414454331","https://openalex.org/W4414471892","https://openalex.org/W4414938270","https://openalex.org/W4415923863","https://openalex.org/W7120961993"],"related_works":[],"abstract_inverted_index":{"Text":[0],"indexing":[1,17],"is":[2,44],"a":[3,25,41],"key":[4],"technique":[5],"that":[6,43],"propels":[7],"DNA/RNA":[8],"analytics":[9],"in":[10],"genomics,":[11],"metagenomics":[12],"and":[13,47],"transcriptomics.":[14],"However,":[15],"popular":[16],"methods,":[18],"e.g.,":[19],"FM-Index,":[20],"are":[21],"inherently":[22],"static.":[23],"As":[24],"result,":[26],"incorporating":[27],"new":[28],"data,":[29],"for":[30],"instance,":[31],"newly":[32],"sequenced":[33],"genomes,":[34],"typically":[35],"requires":[36],"rebuilding":[37],"the":[38],"entire":[39],"index,":[40],"process":[42],"computationally":[45],"expensive":[46],"misaligned":[48],"with":[49],"continuous":[50],"sequencing":[51],"workflows.":[52]},"counts_by_year":[],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2026-07-29T00:00:00"}
