{"id":"https://openalex.org/W7171569297","doi":"https://doi.org/10.1145/3807503.3819486","title":"Velocity-Weighted Gene Regulatory Modeling Identifies Drivers of Drug-Induced Plasticity","display_name":"Velocity-Weighted Gene Regulatory Modeling Identifies Drivers of Drug-Induced Plasticity","publication_year":2026,"publication_date":"2026-06-30","ids":{"openalex":"https://openalex.org/W7171569297","doi":"https://doi.org/10.1145/3807503.3819486"},"language":null,"primary_location":{"id":"doi:10.1145/3807503.3819486","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819486","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3807503.3819486","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060699377","display_name":"Vasam Manjveekar Prabantu","orcid":"https://orcid.org/0000-0001-8024-8708"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manjveekar Prabantu Vasam","raw_affiliation_strings":["Purdue Institute for Cancer Research, Purdue University, West Lafayette, Indiana, USA"],"raw_orcid":"https://orcid.org/0000-0001-8024-8708","affiliations":[{"raw_affiliation_string":"Purdue Institute for Cancer Research, Purdue University, West Lafayette, Indiana, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059384594","display_name":"Mengbo Wang","orcid":"https://orcid.org/0000-0002-0266-9993"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mengbo Wang","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, Indiana, USA"],"raw_orcid":"https://orcid.org/0000-0002-0266-9993","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, Indiana, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5143772128","display_name":"Shourya Verma","orcid":"https://orcid.org/0009-0002-6168-0778"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shourya Verma","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, Indiana, USA"],"raw_orcid":"https://orcid.org/0009-0002-6168-0778","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, Indiana, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029731301","display_name":"Luopin Wang","orcid":"https://orcid.org/0000-0001-5758-4092"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luopin Wang","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, Indiana, USA"],"raw_orcid":"https://orcid.org/0000-0001-5758-4092","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, Indiana, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019202832","display_name":"Ananth Grama","orcid":"https://orcid.org/0000-0002-9378-9244"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ananth Grama","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, Indiana, USA"],"raw_orcid":"https://orcid.org/0000-0002-9378-9244","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, Indiana, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026862562","display_name":"Nadia A. Lanman","orcid":"https://orcid.org/0000-0002-1819-7070"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nadia Lanman","raw_affiliation_strings":["Purdue Institute for Cancer Research, Purdue University, West Lafayette, Indiana, USA"],"raw_orcid":"https://orcid.org/0000-0002-1819-7070","affiliations":[{"raw_affiliation_string":"Purdue Institute for Cancer Research, Purdue University, West Lafayette, Indiana, USA","institution_ids":["https://openalex.org/I219193219"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I219193219"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.37400001287460327},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.36000001430511475},{"id":"https://openalex.org/keywords/plasticity","display_name":"Plasticity","score":0.35249999165534973},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.34119999408721924},{"id":"https://openalex.org/keywords/regulator-gene","display_name":"Regulator gene","score":0.3176000118255615}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4876999855041504},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.37400001287460327},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36250001192092896},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36000001430511475},{"id":"https://openalex.org/C79186407","wikidata":"https://www.wikidata.org/wiki/Q472074","display_name":"Plasticity","level":2,"score":0.35249999165534973},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3449999988079071},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.34119999408721924},{"id":"https://openalex.org/C33498276","wikidata":"https://www.wikidata.org/wiki/Q2138797","display_name":"Regulator gene","level":4,"score":0.3176000118255615},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.29829999804496765},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2809000015258789},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.25699999928474426}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3807503.3819486","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819486","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3807503.3819486","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819486","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1753659383","https://openalex.org/W1984883254","https://openalex.org/W2043696829","https://openalex.org/W2048733384","https://openalex.org/W2106391833","https://openalex.org/W2161821474","https://openalex.org/W2169456326","https://openalex.org/W2272802268","https://openalex.org/W2275679174","https://openalex.org/W2346133077","https://openalex.org/W2616922646","https://openalex.org/W2765831845","https://openalex.org/W2766437506","https://openalex.org/W2800392236","https://openalex.org/W2897249806","https://openalex.org/W2984472267","https://openalex.org/W3036206386","https://openalex.org/W3047141442","https://openalex.org/W3134442664","https://openalex.org/W3187309064","https://openalex.org/W3189724491","https://openalex.org/W4294011199","https://openalex.org/W4395068881","https://openalex.org/W4402128677","https://openalex.org/W4413116815"],"related_works":[],"abstract_inverted_index":{"Drug-tolerant":[0],"persister":[1],"(DTP)":[2],"cells":[3,21],"constitute":[4],"a":[5,29,51],"transient,":[6],"non-genetic":[7],"subpopulation":[8],"that":[9,93],"survives":[10],"otherwise":[11],"lethal":[12],"drug":[13,24,76],"exposure.":[14],"Rather":[15],"than":[16],"being":[17],"genetically":[18],"invariant,":[19],"these":[20],"exhibit":[22],"reversible":[23],"tolerance":[25],"and":[26,41],"serve":[27],"as":[28,55],"reservoir":[30],"from":[31],"which":[32],"diverse":[33],"resistance":[34,62],"mechanisms":[35],"can":[36],"emerge,":[37],"including":[38],"genetic":[39],"relapse":[40],"stable":[42],"phenotypic":[43],"reprogramming.":[44],"Non\u2013small":[45],"cell":[46],"lung":[47],"cancer":[48],"(NSCLC)":[49],"provides":[50],"suitable":[52],"model":[53],"system,":[54],"DTPs":[56],"are":[57],"well-documented":[58],"contributors":[59],"to":[60],"therapeutic":[61],"in":[63],"EGFR-mutant":[64],"disease.":[65],"Single-cell":[66],"RNA":[67],"sequencing":[68],"enables":[69],"study":[70],"of":[71],"extensive":[72],"transcriptional":[73,86],"heterogeneity":[74],"during":[75],"response.":[77],"However,":[78],"common":[79],"analytical":[80],"approaches":[81],"rely":[82],"on":[83],"characterizing":[84],"downstream":[85],"changes":[87],"without":[88],"distinguishing":[89],"upstream":[90],"regulatory":[91],"drivers":[92],"orchestrate":[94],"adaptive":[95],"state":[96],"transitions.":[97]},"counts_by_year":[],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2026-07-29T00:00:00"}
