{"id":"https://openalex.org/W7171526976","doi":"https://doi.org/10.1145/3807503.3819484","title":"Reliable Decomposition of Binary and Continuous Correlations in scRNA-seq","display_name":"Reliable Decomposition of Binary and Continuous Correlations in scRNA-seq","publication_year":2026,"publication_date":"2026-06-30","ids":{"openalex":"https://openalex.org/W7171526976","doi":"https://doi.org/10.1145/3807503.3819484"},"language":null,"primary_location":{"id":"doi:10.1145/3807503.3819484","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819484","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3807503.3819484","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5143801826","display_name":"Weixi Luo","orcid":"https://orcid.org/0009-0001-6446-5734"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weixi Luo","raw_affiliation_strings":["Department of Computer Science, Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":"https://orcid.org/0009-0001-6446-5734","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5143752551","display_name":"Cheng Wang","orcid":"https://orcid.org/0009-0006-0667-725X"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng Wang","raw_affiliation_strings":["Global Institute of Future Technology, Shanghai Jiaotong University, Shanghai, China"],"raw_orcid":"https://orcid.org/0009-0006-0667-725X","affiliations":[{"raw_affiliation_string":"Global Institute of Future Technology, Shanghai Jiaotong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015764172","display_name":"\u6bdb\u51b2\u9704","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chongxiao Mao","raw_affiliation_strings":["Global Institute of Future Technology, Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":"https://orcid.org/0009-0008-7294-7160","affiliations":[{"raw_affiliation_string":"Global Institute of Future Technology, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100397381","display_name":"Yang Yang","orcid":"https://orcid.org/0000-0001-5720-773X"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Yang","raw_affiliation_strings":["Department of Computer Science, Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0001-5720-773X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072095533","display_name":"Qiuyu Lian","orcid":"https://orcid.org/0000-0002-5279-1989"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I2801782436","display_name":"The Gurdon Institute","ror":"https://ror.org/00fp3ce15","country_code":"GB","type":"facility","lineage":["https://openalex.org/I241749","https://openalex.org/I2801316944","https://openalex.org/I2801782436","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Qiuyu Lian","raw_affiliation_strings":["Gurdon Institute, University of Cambridge, Cambridge, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-5279-1989","affiliations":[{"raw_affiliation_string":"Gurdon Institute, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749","https://openalex.org/I2801782436"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087925176","display_name":"Hongyi Xin","orcid":"https://orcid.org/0000-0003-2864-7386"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongyi Xin","raw_affiliation_strings":["Global Institute of Future Technology, Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0003-2864-7386","affiliations":[{"raw_affiliation_string":"Global Institute of Future Technology, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.571399986743927},{"id":"https://openalex.org/keywords/binary-data","display_name":"Binary data","score":0.4578999876976013},{"id":"https://openalex.org/keywords/decomposition","display_name":"Decomposition","score":0.37139999866485596},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.3653999865055084}],"concepts":[{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.571399986743927},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.47909998893737793},{"id":"https://openalex.org/C2779190172","wikidata":"https://www.wikidata.org/wiki/Q4913888","display_name":"Binary data","level":3,"score":0.4578999876976013},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.37139999866485596},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.3653999865055084},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3212999999523163},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.30300000309944153},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2992999851703644},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.2581999897956848},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.2531000077724457}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3807503.3819484","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819484","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3807503.3819484","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819484","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W2036571820","https://openalex.org/W2044525257","https://openalex.org/W2108393758","https://openalex.org/W2118590195","https://openalex.org/W2121695897","https://openalex.org/W2140158840","https://openalex.org/W2154359271","https://openalex.org/W2161868542","https://openalex.org/W2163296115","https://openalex.org/W2169690805","https://openalex.org/W2800392236","https://openalex.org/W2803928488","https://openalex.org/W2901677030","https://openalex.org/W2949237386","https://openalex.org/W2950830085","https://openalex.org/W2979911343","https://openalex.org/W2993894543","https://openalex.org/W3000145506","https://openalex.org/W3009370296","https://openalex.org/W3131450268","https://openalex.org/W3185266697","https://openalex.org/W4210607772","https://openalex.org/W4220877347","https://openalex.org/W4306698125","https://openalex.org/W4376128866","https://openalex.org/W4385752307","https://openalex.org/W4399781483","https://openalex.org/W4410278435"],"related_works":[],"abstract_inverted_index":{"Inferring":[0],"inter-gene":[1],"correlations":[2,89],"is":[3],"an":[4,75],"essential":[5],"task":[6],"in":[7],"single-cell":[8],"transcriptomic":[9],"analytics,":[10],"providing":[11],"the":[12,51],"basis":[13],"for":[14],"identifying":[15],"gene":[16,55],"regulatory":[17],"networks":[18],"and":[19,35,43,86],"performing":[20],"dimension":[21],"reduction.":[22],"Conventionally,":[23],"these":[24],"associations":[25],"are":[26],"quantified":[27],"using":[28],"either":[29],"continuous":[30],"metrics,":[31],"such":[32],"as":[33,57],"Pearson":[34],"Spearman":[36],"correlations,":[37],"or":[38],"binary":[39],"measures":[40],"of":[41,54],"co-dependency":[42],"mutual":[44],"exclusivity.":[45],"However,":[46],"neither":[47],"approach":[48],"fully":[49],"captures":[50],"nuanced":[52],"nature":[53],"expression,":[56],"they":[58],"fail":[59],"to":[60,84],"disentangle":[61],"shared":[62],"activation":[63],"from":[64],"expression-strength":[65],"association.":[66],"This":[67],"can":[68],"obscure":[69],"biological":[70],"scenarios":[71],"where":[72],"genes":[73],"share":[74],"epigenetic":[76],"landscape":[77],"yet":[78],"exhibit":[79],"inverse":[80],"transcriptional":[81],"regulation,":[82],"leading":[83],"context-dependent":[85],"sometimes":[87],"contradictory":[88],"across":[90],"population":[91],"granularities.":[92]},"counts_by_year":[],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2026-07-29T00:00:00"}
