{"id":"https://openalex.org/W7171566323","doi":"https://doi.org/10.1145/3807503.3819447","title":"Integrative Multi-Omics Approach with Graph Attention Network and Cross-Attention to Uncover Alzheimer's Disease Subtypes","display_name":"Integrative Multi-Omics Approach with Graph Attention Network and Cross-Attention to Uncover Alzheimer's Disease Subtypes","publication_year":2026,"publication_date":"2026-06-30","ids":{"openalex":"https://openalex.org/W7171566323","doi":"https://doi.org/10.1145/3807503.3819447"},"language":null,"primary_location":{"id":"doi:10.1145/3807503.3819447","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819447","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3807503.3819447","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5143826984","display_name":"Ziyan Song","orcid":"https://orcid.org/0009-0000-5679-1751"},"institutions":[{"id":"https://openalex.org/I1283055418","display_name":"Indiana University Health","ror":"https://ror.org/01aaptx40","country_code":"US","type":"funder","lineage":["https://openalex.org/I1283055418","https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ziyan Song","raw_affiliation_strings":["Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA"],"raw_orcid":"https://orcid.org/0009-0000-5679-1751","affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1283055418","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109408708","display_name":"Xiaoqing Huang","orcid":"https://orcid.org/0009-0003-2183-8398"},"institutions":[{"id":"https://openalex.org/I1283055418","display_name":"Indiana University Health","ror":"https://ror.org/01aaptx40","country_code":"US","type":"funder","lineage":["https://openalex.org/I1283055418","https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoqing Huang","raw_affiliation_strings":["Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA"],"raw_orcid":"https://orcid.org/0009-0003-2183-8398","affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1283055418","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100326011","display_name":"Jiahui Liu","orcid":"https://orcid.org/0009-0000-4711-9058"},"institutions":[{"id":"https://openalex.org/I1283055418","display_name":"Indiana University Health","ror":"https://ror.org/01aaptx40","country_code":"US","type":"funder","lineage":["https://openalex.org/I1283055418","https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiahui Liu","raw_affiliation_strings":["Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA"],"raw_orcid":"https://orcid.org/0009-0000-4711-9058","affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1283055418","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091082342","display_name":"Junxiang Chen","orcid":"https://orcid.org/0000-0002-8897-754X"},"institutions":[{"id":"https://openalex.org/I1283055418","display_name":"Indiana University Health","ror":"https://ror.org/01aaptx40","country_code":"US","type":"funder","lineage":["https://openalex.org/I1283055418","https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Junxiang Chen","raw_affiliation_strings":["Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA"],"raw_orcid":"https://orcid.org/0000-0002-8897-754X","affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1283055418","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062080836","display_name":"Travis S. Johnson","orcid":"https://orcid.org/0000-0002-4628-2256"},"institutions":[{"id":"https://openalex.org/I1283055418","display_name":"Indiana University Health","ror":"https://ror.org/01aaptx40","country_code":"US","type":"funder","lineage":["https://openalex.org/I1283055418","https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Travis Steele Johnson","raw_affiliation_strings":["Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA"],"raw_orcid":"https://orcid.org/0000-0002-4628-2256","affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1283055418","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100436623","display_name":"Jie Zhang","orcid":"https://orcid.org/0000-0001-6939-7905"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jie Zhang","raw_affiliation_strings":["Department of Medical and Molecular Genetics,, Indiana University, School of Medicine, Indianapolis, IN, USA"],"raw_orcid":"https://orcid.org/0000-0001-6939-7905","affiliations":[{"raw_affiliation_string":"Department of Medical and Molecular Genetics,, Indiana University, School of Medicine, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057366605","display_name":"Kun Huang","orcid":"https://orcid.org/0000-0002-8530-370X"},"institutions":[{"id":"https://openalex.org/I1283055418","display_name":"Indiana University Health","ror":"https://ror.org/01aaptx40","country_code":"US","type":"funder","lineage":["https://openalex.org/I1283055418","https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kun Huang","raw_affiliation_strings":["Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA"],"raw_orcid":"https://orcid.org/0000-0002-8530-370X","affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University, School of Medicine, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1283055418","https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.49779999256134033},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4555000066757202},{"id":"https://openalex.org/keywords/attention-network","display_name":"Attention network","score":0.30309998989105225},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.28610000014305115},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.2653000056743622}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5767999887466431},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.49779999256134033},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4555000066757202},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42329999804496765},{"id":"https://openalex.org/C2993807640","wikidata":"https://www.wikidata.org/wiki/Q103709453","display_name":"Attention network","level":2,"score":0.30309998989105225},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.28610000014305115},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.2653000056743622},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.26109999418258667},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.24580000340938568},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.24169999361038208}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3807503.3819447","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819447","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3807503.3819447","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3807503.3819447","pdf_url":null,"source":null,"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 17th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7040203776","display_name":null,"funder_award_id":"5U54AG065181","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G852492402","display_name":null,"funder_award_id":"R21AG075541","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1964654846","https://openalex.org/W1987219048","https://openalex.org/W1987971958","https://openalex.org/W2035618305","https://openalex.org/W2081119171","https://openalex.org/W2091712128","https://openalex.org/W2114442092","https://openalex.org/W2146512944","https://openalex.org/W2150593711","https://openalex.org/W2509957998","https://openalex.org/W2800392236","https://openalex.org/W2808845633","https://openalex.org/W2942169746","https://openalex.org/W2950372712","https://openalex.org/W2965717703","https://openalex.org/W3029234273","https://openalex.org/W3095124650","https://openalex.org/W3096976771","https://openalex.org/W3136165260","https://openalex.org/W3170986249","https://openalex.org/W3211268553","https://openalex.org/W3213002689","https://openalex.org/W4318946532","https://openalex.org/W4390199767","https://openalex.org/W4392599034","https://openalex.org/W4406396680","https://openalex.org/W7158554282"],"related_works":[],"abstract_inverted_index":{"Alzheimer's":[0],"disease":[1],"(AD)":[2],"is":[3],"clinically":[4,145],"and":[5,15,29,39,79,109,125,156],"molecularly":[6,152],"heterogeneous,":[7],"motivating":[8],"subtype":[9],"discovery":[10],"to":[11,32],"improve":[12],"mechanistic":[13],"understanding":[14],"precision":[16],"therapy.":[17],"We":[18],"developed":[19],"a":[20],"multi-omics":[21],"integration":[22],"framework":[23],"combining":[24],"Graph":[25],"Attention":[26],"Networks":[27],"(GAT)":[28],"pairwise":[30],"cross-attention":[31],"jointly":[33],"model":[34],"transcriptomics,":[35],"proteomics,":[36],"DNA":[37],"methylation,":[38],"clinical":[40,81,86],"data":[41],"from":[42,97],"156":[43],"ROSMAP":[44],"participants.":[45],"K-means":[46],"clustering":[47],"of":[48],"the":[49,61],"learned":[50],"embeddings":[51],"identified":[52,111],"four":[53,139],"patient":[54,147],"clusters,":[55],"including":[56],"two":[57],"AD-enriched":[58],"subtypes.":[59],"Although":[60],"AD":[62,154],"subtypes":[63,155],"did":[64],"not":[65],"differ":[66],"significantly":[67],"in":[68,133],"age,":[69],"sex,":[70],"or":[71],"APOE4":[72],"status,":[73],"they":[74,143],"showed":[75,93],"distinct":[76,153],"molecular":[77,95],"profiles":[78],"modest":[80],"differences:":[82],"AD2":[83,110],"had":[84],"higher":[85],"severity":[87],"scores":[88],"on":[89],"average,":[90],"whereas":[91],"AD1":[92,108],"greater":[94],"divergence":[96],"normal":[98],"controls":[99],"by":[100],"pseudotime":[101],"analysis.":[102],"Differential":[103],"expression":[104],"(DE)":[105],"analysis":[106],"between":[107],"75":[112],"genes":[113,129],"enriched":[114],"for":[115,160],"processes":[116],"involving":[117],"mitochondrial":[118],"function,":[119],"synaptic":[120],"signaling,":[121],"metal":[122],"ion":[123],"response,":[124],"clathrin-vesicle":[126],"dynamics.":[127],"These":[128,149],"were":[130],"further":[131],"validated":[132],"an":[134],"independent":[135],"MSBB":[136],"cohort":[137],"across":[138],"brain":[140],"regions,":[141],"where":[142],"distinguished":[144],"relevant":[146],"subgroups.":[148],"findings":[150],"suggest":[151],"highlight":[157],"candidate":[158],"pathways":[159],"subtype-specific":[161],"investigation.":[162]},"counts_by_year":[],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2026-07-29T00:00:00"}
