{"id":"https://openalex.org/W7138995791","doi":"https://doi.org/10.1145/3788149.3788227","title":"Agentic LLM Pipelines for Reproducible Scientific Software: Opportunities and Challenges","display_name":"Agentic LLM Pipelines for Reproducible Scientific Software: Opportunities and Challenges","publication_year":2025,"publication_date":"2025-12-12","ids":{"openalex":"https://openalex.org/W7138995791","doi":"https://doi.org/10.1145/3788149.3788227"},"language":null,"primary_location":{"id":"doi:10.1145/3788149.3788227","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3788149.3788227","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2025 9th International Conference on Computer Science and Artificial Intelligence","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3788149.3788227","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5129833990","display_name":"Andrey Adashchik","orcid":null},"institutions":[{"id":"https://openalex.org/I2801221094","display_name":"Constructing Excellence","ror":"https://ror.org/04vxrkc13","country_code":"GB","type":"other","lineage":["https://openalex.org/I2801221094"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrey Adashchik","raw_affiliation_strings":["Constructor University, Bremen, Germany and Constructor Knowledge Labs, Bremen, Germany"],"raw_orcid":"https://orcid.org/0009-0006-2948-0708","affiliations":[{"raw_affiliation_string":"Constructor University, Bremen, Germany and Constructor Knowledge Labs, Bremen, Germany","institution_ids":["https://openalex.org/I2801221094"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5130102991","display_name":"Abu Huraira","orcid":null},"institutions":[{"id":"https://openalex.org/I2801221094","display_name":"Constructing Excellence","ror":"https://ror.org/04vxrkc13","country_code":"GB","type":"other","lineage":["https://openalex.org/I2801221094"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Abu Huraira","raw_affiliation_strings":["Constructor Knowledge Labs, Bremen, Germany"],"raw_orcid":"https://orcid.org/0009-0003-0459-3894","affiliations":[{"raw_affiliation_string":"Constructor Knowledge Labs, Bremen, Germany","institution_ids":["https://openalex.org/I2801221094"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021301383","display_name":"Zamira Kholmatova","orcid":"https://orcid.org/0000-0003-1688-1183"},"institutions":[{"id":"https://openalex.org/I4210116741","display_name":"Innopolis University","ror":"https://ror.org/02b7jh107","country_code":"RU","type":"education","lineage":["https://openalex.org/I4210116741"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Zamira Kholmatova","raw_affiliation_strings":["Innopolis University, Innopolis, Russian Federation"],"raw_orcid":"https://orcid.org/0000-0003-1688-1183","affiliations":[{"raw_affiliation_string":"Innopolis University, Innopolis, Russian Federation","institution_ids":["https://openalex.org/I4210116741"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117199799","display_name":"Andrei Mikriukov","orcid":null},"institutions":[{"id":"https://openalex.org/I2801221094","display_name":"Constructing Excellence","ror":"https://ror.org/04vxrkc13","country_code":"GB","type":"other","lineage":["https://openalex.org/I2801221094"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrei Mikriukov","raw_affiliation_strings":["Constructor Knowledge Labs, Bremen, Germany and Constructor University, Bremen, Germany"],"raw_orcid":"https://orcid.org/0009-0007-0930-3680","affiliations":[{"raw_affiliation_string":"Constructor Knowledge Labs, Bremen, Germany and Constructor University, Bremen, Germany","institution_ids":["https://openalex.org/I2801221094"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120024265","display_name":"Alessandro Ravveduto","orcid":null},"institutions":[{"id":"https://openalex.org/I193619901","display_name":"Constructor University","ror":"https://ror.org/02yrs2n53","country_code":"DE","type":"education","lineage":["https://openalex.org/I193619901"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alessandro Ravveduto","raw_affiliation_strings":["Constructor University, Bremen, Germany"],"raw_orcid":"https://orcid.org/0009-0009-8999-7479","affiliations":[{"raw_affiliation_string":"Constructor University, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126724038","display_name":"Mariia Snigireva","orcid":null},"institutions":[{"id":"https://openalex.org/I2801221094","display_name":"Constructing Excellence","ror":"https://ror.org/04vxrkc13","country_code":"GB","type":"other","lineage":["https://openalex.org/I2801221094"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mariia Snigireva","raw_affiliation_strings":["Constructor University, Bremen, Germany and Constructor Knowledge Labs, Bremen, Germany"],"raw_orcid":"https://orcid.org/0009-0008-5109-3557","affiliations":[{"raw_affiliation_string":"Constructor University, Bremen, Germany and Constructor Knowledge Labs, Bremen, Germany","institution_ids":["https://openalex.org/I2801221094"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039583821","display_name":"Giancarlo Succi","orcid":"https://orcid.org/0000-0001-8847-0186"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giancarlo Succi","raw_affiliation_strings":["Universita di Bologna, Alma Mater Studiorum, Bologna, Italy and Constructor University, Bremen, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8847-0186","affiliations":[{"raw_affiliation_string":"Universita di Bologna, Alma Mater Studiorum, Bologna, Italy and Constructor University, Bremen, Germany","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047106210","display_name":"Alexander Tormasov","orcid":"https://orcid.org/0000-0001-6887-4327"},"institutions":[{"id":"https://openalex.org/I193619901","display_name":"Constructor University","ror":"https://ror.org/02yrs2n53","country_code":"DE","type":"education","lineage":["https://openalex.org/I193619901"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Tormasov","raw_affiliation_strings":["Constructor University, Bremen, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6887-4327","affiliations":[{"raw_affiliation_string":"Constructor University, Bremen, Germany","institution_ids":["https://openalex.org/I193619901"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5129809899","display_name":"Ekaterina Trofimova","orcid":null},"institutions":[{"id":"https://openalex.org/I125989756","display_name":"Skolkovo Institute of Science and Technology","ror":"https://ror.org/03f9nc143","country_code":"RU","type":"education","lineage":["https://openalex.org/I125989756"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Ekaterina Trofimova","raw_affiliation_strings":["Skolkovo Institute of Science and Technology, Moscow, Russian Federation"],"raw_orcid":"https://orcid.org/0000-0001-5436-8511","affiliations":[{"raw_affiliation_string":"Skolkovo Institute of Science and Technology, Moscow, Russian Federation","institution_ids":["https://openalex.org/I125989756"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"38","last_page":"46"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.7129999995231628,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.7129999995231628,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12784","display_name":"Modular Robots and Swarm Intelligence","score":0.043699998408555984,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.014399999752640724,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.48820000886917114},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.42649999260902405},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.30820000171661377},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.27970001101493835},{"id":"https://openalex.org/keywords/work","display_name":"Work (physics)","score":0.2711000144481659}],"concepts":[{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.48820000886917114},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.4555000066757202},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.42649999260902405},{"id":"https://openalex.org/C55587333","wikidata":"https://www.wikidata.org/wiki/Q1133029","display_name":"Engineering ethics","level":1,"score":0.3314000070095062},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3199000060558319},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.30820000171661377},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.28139999508857727},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.27970001101493835},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.2711000144481659},{"id":"https://openalex.org/C108170787","wikidata":"https://www.wikidata.org/wiki/Q3951828","display_name":"Agency (philosophy)","level":2,"score":0.25859999656677246},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.2554999887943268}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3788149.3788227","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3788149.3788227","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2025 9th International Conference on Computer Science and Artificial Intelligence","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3788149.3788227","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3788149.3788227","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2025 9th International Conference on Computer Science and Artificial Intelligence","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Gender equality","score":0.4821260869503021,"id":"https://metadata.un.org/sdg/5"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W2431100065","https://openalex.org/W2597357676","https://openalex.org/W3141677440","https://openalex.org/W3149889935","https://openalex.org/W3188518593","https://openalex.org/W4244185376","https://openalex.org/W4293027890","https://openalex.org/W4391740237","https://openalex.org/W4392445590","https://openalex.org/W4402581955","https://openalex.org/W4402673617","https://openalex.org/W4403615738","https://openalex.org/W4404133148","https://openalex.org/W4409967821","https://openalex.org/W4410487210","https://openalex.org/W7117247250","https://openalex.org/W7133202489"],"related_works":[],"abstract_inverted_index":{"Reproducibility":[0],"of":[1,69,72,84],"scientific":[2],"experiments":[3],"in":[4,94],"computer":[5],"science":[6],"is":[7],"still":[8],"a":[9,26],"critical":[10],"issue,":[11],"especially":[12,52],"because":[13],"the":[14,67,70,81],"experimental":[15],"software":[16],"becomes":[17],"more":[18,20],"and":[19,23,34,90],"complex,":[21],"diverse,":[22],"depends":[24],"on":[25],"specific":[27],"environment.":[28],"While":[29],"tools":[30],"that":[31],"enable":[32],"packaging":[33],"environment":[35],"replication":[36],"have":[37],"greatly":[38],"facilitated":[39],"making":[40],"research":[41,79,92],"transparent,":[42],"significant":[43],"barriers":[44],"continue":[45],"to":[46,74],"exist":[47],"for":[48],"using":[49],"computational":[50],"results":[51],"when":[53],"new":[54],"data":[55],"or":[56],"workflows":[57],"are":[58],"used.":[59],"With":[60],"this":[61,95],"review,":[62],"we":[63],"aim":[64],"at":[65],"surveying":[66],"state":[68],"art":[71],"instruments":[73],"foster":[75],"reproducible":[76],"research.":[77],"This":[78],"discusses":[80],"unique":[82],"position":[83],"agent-based":[85],"approaches,":[86],"identifies":[87],"open":[88],"challenges,":[89],"future":[91],"directions":[93],"evolving":[96],"field.":[97]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2026-03-20T00:00:00"}
