{"id":"https://openalex.org/W7170080070","doi":"https://doi.org/10.1145/3785462.3815845","title":"The Virtual Biospecimen Repository","display_name":"The Virtual Biospecimen Repository","publication_year":2026,"publication_date":"2026-07-22","ids":{"openalex":"https://openalex.org/W7170080070","doi":"https://doi.org/10.1145/3785462.3815845"},"language":null,"primary_location":{"id":"doi:10.1145/3785462.3815845","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3785462.3815845","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Practice and Experience in Advanced Research Computing 2026: Resilient Roots + Empowered Communities","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3785462.3815845","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003950738","display_name":"Joshua A. Urrutia","orcid":"https://orcid.org/0000-0003-2171-0936"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua Urrutia","raw_affiliation_strings":["Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA"],"raw_orcid":"https://orcid.org/0000-0003-2171-0936","affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020010821","display_name":"Matthew Vaughn","orcid":"https://orcid.org/0000-0002-1384-4283"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Vaughn","raw_affiliation_strings":["Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA"],"raw_orcid":"https://orcid.org/0000-0002-1384-4283","affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5143414776","display_name":"Pat Scherer","orcid":"https://orcid.org/0009-0003-0721-7253"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pat Scherer","raw_affiliation_strings":["Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA"],"raw_orcid":"https://orcid.org/0009-0003-0721-7253","affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006226110","display_name":"Margaret A. Taub","orcid":"https://orcid.org/0000-0001-8008-618X"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Margaret Taub","raw_affiliation_strings":["Johns Hopkins University, Baltimore, MD, USA"],"raw_orcid":"https://orcid.org/0000-0001-8008-618X","affiliations":[{"raw_affiliation_string":"Johns Hopkins University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089262648","display_name":"Briha Ansari","orcid":"https://orcid.org/0000-0001-8316-3320"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Briha Ansari","raw_affiliation_strings":["Johns Hopkins University, Baltimore, MD, USA"],"raw_orcid":"https://orcid.org/0000-0001-8316-3320","affiliations":[{"raw_affiliation_string":"Johns Hopkins University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081970058","display_name":"Andre Hackman","orcid":"https://orcid.org/0000-0002-6401-2831"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andre Hackman","raw_affiliation_strings":["Johns Hopkins University, Baltimore, MD, USA"],"raw_orcid":"https://orcid.org/0000-0002-6401-2831","affiliations":[{"raw_affiliation_string":"Johns Hopkins University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061082345","display_name":"Adi Gherman","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adi Gherman","raw_affiliation_strings":["Johns Hopkins University, Baltimore, MD, USA"],"raw_orcid":"https://orcid.org/0000-0003-1787-4639","affiliations":[{"raw_affiliation_string":"Johns Hopkins University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102324065","display_name":"Christian Garcia","orcid":null},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christian Garcia","raw_affiliation_strings":["Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA"],"raw_orcid":"https://orcid.org/0000-0001-8711-872X","affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002759577","display_name":"Joe Stubbs","orcid":"https://orcid.org/0000-0002-8644-0300"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joe Stubbs","raw_affiliation_strings":["Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA"],"raw_orcid":"https://orcid.org/0000-0002-8644-0300","affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078550956","display_name":"James P. Carson","orcid":"https://orcid.org/0000-0001-9009-5645"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Carson","raw_affiliation_strings":["Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA"],"raw_orcid":"https://orcid.org/0000-0001-9009-5645","affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010490290","display_name":"Martin A. Lindquist","orcid":"https://orcid.org/0000-0003-2289-0828"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin Lindquist","raw_affiliation_strings":["Johns Hopkins University, Baltimore, MD, USA"],"raw_orcid":"https://orcid.org/0000-0003-2289-0828","affiliations":[{"raw_affiliation_string":"Johns Hopkins University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112601327","display_name":"A. Kahn","orcid":"https://orcid.org/0000-0002-6212-2842"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ari Kahn","raw_affiliation_strings":["Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA"],"raw_orcid":"https://orcid.org/0000-0002-6212-2842","affiliations":[{"raw_affiliation_string":"Texas Advanced Computing Center, The University of Texas at Austin, Austin, TX, USA","institution_ids":["https://openalex.org/I86519309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8008000254631042},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6873000264167786},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.48910000920295715},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.4765999913215637},{"id":"https://openalex.org/keywords/blueprint","display_name":"Blueprint","score":0.4747999906539917},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.46560001373291016},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.38690000772476196},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.3368000090122223}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8008000254631042},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6873000264167786},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6747999787330627},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.48910000920295715},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.4765999913215637},{"id":"https://openalex.org/C155911762","wikidata":"https://www.wikidata.org/wiki/Q422321","display_name":"Blueprint","level":2,"score":0.4747999906539917},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.46560001373291016},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.38690000772476196},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.3368000090122223},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.33149999380111694},{"id":"https://openalex.org/C2781018962","wikidata":"https://www.wikidata.org/wiki/Q5164884","display_name":"Container (type theory)","level":2,"score":0.3197999894618988},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.30970001220703125},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2985000014305115},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2971999943256378},{"id":"https://openalex.org/C47487241","wikidata":"https://www.wikidata.org/wiki/Q5227230","display_name":"Data access","level":2,"score":0.2896000146865845},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.2870999872684479},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.28439998626708984},{"id":"https://openalex.org/C116537","wikidata":"https://www.wikidata.org/wiki/Q2169973","display_name":"Service provider","level":3,"score":0.2759999930858612},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.274399995803833},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.2705000042915344},{"id":"https://openalex.org/C2776397876","wikidata":"https://www.wikidata.org/wiki/Q1450531","display_name":"Cyberinfrastructure","level":2,"score":0.26899999380111694},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.2621999979019165},{"id":"https://openalex.org/C169468491","wikidata":"https://www.wikidata.org/wiki/Q146923","display_name":"Middleware (distributed applications)","level":2,"score":0.25049999356269836}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3785462.3815845","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3785462.3815845","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Practice and Experience in Advanced Research Computing 2026: Resilient Roots + Empowered Communities","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3785462.3815845","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3785462.3815845","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Practice and Experience in Advanced Research Computing 2026: Resilient Roots + Empowered Communities","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2185165211","display_name":"Transition from Acute to Chronic Pain in Total Knee Arthroplasty Patients: Identifying Resilience and Vulnerability Profiles","funder_award_id":"3um1ns112874-03s1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2910304475","display_name":"Omics Data Generation Center (ODGC) for the Acute to Chronic Pain Signatures (A2CPS) Program","funder_award_id":"4u54da049115-05","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2973329168","display_name":"Clinical Coordinating Center for the Acute to Chronic Pain Signatures Program","funder_award_id":"3u24ns112873-04s2","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G325858568","display_name":"Data Center for Acute to Chronic Pain Biosignatures","funder_award_id":"5u54da049110-06","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3279298112","display_name":"Transition from Acute to Chronic Pain After Thoracic Surgery","funder_award_id":"5um1ns118922-03","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G550711526","display_name":"Integrated Omics Analysis of Pain: Omics Data Generation Center","funder_award_id":"5u54da049113-06","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8950836018","display_name":"PSP Omics Center of Acute to Chronic Pain Signatures","funder_award_id":"4u54da049116-05","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W2093274439","https://openalex.org/W2302501749","https://openalex.org/W3043992826","https://openalex.org/W3156001951","https://openalex.org/W3184043604","https://openalex.org/W4224866863","https://openalex.org/W4284959541","https://openalex.org/W4309669662","https://openalex.org/W4380872598","https://openalex.org/W4386585097","https://openalex.org/W4388581233","https://openalex.org/W4405641065","https://openalex.org/W6911546425","https://openalex.org/W7119484817","https://openalex.org/W7153837044","https://openalex.org/W7163223904"],"related_works":[],"abstract_inverted_index":{"This":[0],"work":[1],"is":[2,60,161],"submitted":[3],"on":[4,163],"behalf":[5],"of":[6,44,48,51,65,85,89],"the":[7,25,49,52,63,83,96],"A2CPS":[8,53],"Consortium.":[9],"Acute":[10],"to":[11,17,29,61],"Chronic":[12],"Pain":[13],"Signatures":[14],"(A2CPS)":[15],"seeks":[16],"identify":[18],"biomarkers":[19],"and":[20,56,68,82,117,135,141,151,155],"mechanistic":[21],"signatures":[22],"that":[23,105],"predict":[24],"transition":[26],"from":[27],"acute":[28],"chronic":[30],"postsurgical":[31],"pain":[32],"through":[33],"a":[34,86,101,123,132,170],"multisite":[35,175],"clinical":[36],"study":[37],"spanning":[38],"multiple":[39,71],"perioperative":[40],"timepoints.":[41],"In":[42],"service":[43],"this":[45],"goal,":[46],"one":[47],"tasks":[50],"Data":[54,109],"Integration":[55],"Resource":[57],"Center":[58],"(DIRC)":[59],"manage":[62],"logistics":[64,133],"biospecimens":[66],"collected":[67],"utilized":[69],"across":[70],"sites.":[72],"Key":[73],"challenges":[74],"include":[75],"fragmented":[76],"REDCap":[77],"instances,":[78],"disjointed":[79],"shipping":[80,154],"workflows,":[81],"lack":[84],"unified":[87],"chain":[88],"custody.":[90],"To":[91],"address":[92],"this,":[93],"we":[94],"created":[95],"Virtual":[97],"Biospecimen":[98],"Repository":[99],"(VBR),":[100],"standards\u2011aligned,":[102],"event\u2011driven":[103],"platform":[104],"implements":[106],"Common":[107],"Fund":[108],"Ecosystem":[110],"(CFDE)":[111],"Crosscut":[112],"Metadata":[113],"Model":[114],"(C2M2)":[115],"entities":[116],"workflow":[118],"automation.":[119],"The":[120,144,158],"VBR":[121,145,159],"includes":[122],"REST":[124],"Application":[125],"Programming":[126],"Interface":[127],"(API),":[128],"an":[129],"event":[130],"model,":[131,134],"integration":[136],"with":[137,165],"REDCap,":[138],"research":[139],"cyberinfrastructure,":[140],"query":[142],"services.":[143],"improves":[146],"traceability,":[147],"reduces":[148],"ingestion":[149],"friction,":[150],"enables":[152],"automated":[153],"assay":[156],"workflows.":[157],"API":[160],"open\u2011source":[162],"GitHub":[164],"detailed":[166],"documentation,":[167],"making":[168],"it":[169],"reusable":[171],"blueprint":[172],"for":[173],"future":[174],"studies.":[176]},"counts_by_year":[],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2026-07-23T00:00:00"}
