{"id":"https://openalex.org/W4417200502","doi":"https://doi.org/10.1145/3765612.3767774","title":"Predicting Pneumococcal Meningitis from Demographics and Early AMR Signals","display_name":"Predicting Pneumococcal Meningitis from Demographics and Early AMR Signals","publication_year":2025,"publication_date":"2025-10-12","ids":{"openalex":"https://openalex.org/W4417200502","doi":"https://doi.org/10.1145/3765612.3767774"},"language":null,"primary_location":{"id":"doi:10.1145/3765612.3767774","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3765612.3767774","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3765612.3767774","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 16th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3765612.3767774","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044296196","display_name":"Michael Aaron Sy","orcid":"https://orcid.org/0000-0001-9281-7592"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Aaron Sy","raw_affiliation_strings":["University of Florida, Gainesville, FL, USA"],"raw_orcid":"https://orcid.org/0000-0001-9281-7592","affiliations":[{"raw_affiliation_string":"University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065458799","display_name":"Garrett L. Ellward","orcid":"https://orcid.org/0000-0002-3771-4301"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Garrett Ellward","raw_affiliation_strings":["University of Florida, Gainesville, FL, USA"],"raw_orcid":"https://orcid.org/0000-0002-3771-4301","affiliations":[{"raw_affiliation_string":"University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068650337","display_name":"Daniel M. Czy\u017c","orcid":"https://orcid.org/0000-0002-7491-5292"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Czyz","raw_affiliation_strings":["University of Florida, Gainesville, FL, USA"],"raw_orcid":"https://orcid.org/0000-0002-7491-5292","affiliations":[{"raw_affiliation_string":"University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040939546","display_name":"Vidhu Kariyawasam","orcid":"https://orcid.org/0000-0003-3895-5673"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vidhu Kariyawasam","raw_affiliation_strings":["University of Florida, Gainesville, FL, USA"],"raw_orcid":"https://orcid.org/0000-0003-3895-5673","affiliations":[{"raw_affiliation_string":"University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042618575","display_name":"Panayiotis V. Benos","orcid":"https://orcid.org/0000-0003-3172-3132"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Panayiotis V. Benos","raw_affiliation_strings":["University of Florida, Gainesville, FL, USA"],"raw_orcid":"https://orcid.org/0000-0003-3172-3132","affiliations":[{"raw_affiliation_string":"University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004394877","display_name":"Simone Marini","orcid":"https://orcid.org/0000-0002-5704-3533"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Simone Marini","raw_affiliation_strings":["University of Florida, Gainesville, FL, USA"],"raw_orcid":"https://orcid.org/0000-0002-5704-3533","affiliations":[{"raw_affiliation_string":"University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.48470874,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10654","display_name":"Pneumonia and Respiratory Infections","score":0.9218000173568726,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10654","display_name":"Pneumonia and Respiratory Infections","score":0.9218000173568726,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.014600000344216824,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.013799999840557575,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/meningitis","display_name":"Meningitis","score":0.7583000063896179},{"id":"https://openalex.org/keywords/demographics","display_name":"Demographics","score":0.6995000243186951},{"id":"https://openalex.org/keywords/logistic-regression","display_name":"Logistic regression","score":0.6367999911308289},{"id":"https://openalex.org/keywords/pneumococcal-disease","display_name":"Pneumococcal disease","score":0.5133000016212463},{"id":"https://openalex.org/keywords/serotype","display_name":"Serotype","score":0.4708000123500824},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.364300012588501},{"id":"https://openalex.org/keywords/clinical-practice","display_name":"Clinical Practice","score":0.36169999837875366}],"concepts":[{"id":"https://openalex.org/C2781026528","wikidata":"https://www.wikidata.org/wiki/Q48143","display_name":"Meningitis","level":2,"score":0.7583000063896179},{"id":"https://openalex.org/C2780084366","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demographics","level":2,"score":0.6995000243186951},{"id":"https://openalex.org/C151956035","wikidata":"https://www.wikidata.org/wiki/Q1132755","display_name":"Logistic regression","level":2,"score":0.6367999911308289},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6359999775886536},{"id":"https://openalex.org/C3020803494","wikidata":"https://www.wikidata.org/wiki/Q2712836","display_name":"Pneumococcal disease","level":4,"score":0.5133000016212463},{"id":"https://openalex.org/C10389963","wikidata":"https://www.wikidata.org/wiki/Q848328","display_name":"Serotype","level":2,"score":0.4708000123500824},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.364300012588501},{"id":"https://openalex.org/C2779974597","wikidata":"https://www.wikidata.org/wiki/Q28448986","display_name":"Clinical Practice","level":2,"score":0.36169999837875366},{"id":"https://openalex.org/C187212893","wikidata":"https://www.wikidata.org/wiki/Q123028","display_name":"Pediatrics","level":1,"score":0.35109999775886536},{"id":"https://openalex.org/C3018430615","wikidata":"https://www.wikidata.org/wiki/Q48143","display_name":"Bacterial meningitis","level":3,"score":0.33309999108314514},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.3255999982357025},{"id":"https://openalex.org/C2779301066","wikidata":"https://www.wikidata.org/wiki/Q14538008","display_name":"Pneumococcal vaccine","level":4,"score":0.31470000743865967},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.3046000003814697},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.28929999470710754},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.2782999873161316},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2696000039577484},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.26589998602867126}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3765612.3767774","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3765612.3767774","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3765612.3767774","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 16th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3765612.3767774","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3765612.3767774","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3765612.3767774","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 16th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332932","display_name":"Merck Sharp and Dohme","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4417200502.pdf"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W2460625652","https://openalex.org/W2989664723","https://openalex.org/W3185221162"],"related_works":[],"abstract_inverted_index":{"Bacterial":[0],"meningitis":[1,21,162],"progresses":[2],"rapidly,":[3],"so":[4],"treatment":[5],"is":[6],"often":[7],"initiated":[8],"before":[9],"full":[10],"laboratory":[11],"results":[12],"are":[13,122,169],"available.":[14],"We":[15],"benchmark":[16],"machine-learning":[17],"models":[18,90],"for":[19,161],"predicting":[20],"among":[22],"invasive":[23],"pneumococcal":[24],"disease":[25],"(IPD)":[26],"cases":[27],"using":[28],"routinely":[29],"obtainable":[30],"information":[31],"on":[32],"a":[33,69,133],"realistic":[34],"clinical":[35,119],"timeline.":[36],"Using":[37],"6,049":[38],"Global":[39],"Pneumococcal":[40],"Sequencing":[41],"(GPS)":[42],"records":[43],"(1,646":[44],"meningitis),":[45],"we":[46],"define":[47],"four":[48],"feature":[49],"tiers:":[50],"T1":[51],"demographics":[52],"and":[53,68,87,100,131,137,153],"PCV":[54],"type;":[55],"T2":[56],"adds":[57,61,76],"serotype":[58,113],"group;":[59],"T3":[60],"molecular":[62],"markers":[63],"available":[64],"early":[65,125,157],"(MLST/PBP":[66],"encodings":[67],"small":[70,134],"panel":[71,136],"of":[72],"AMR":[73,135],"genes/loci);":[74],"T4":[75],"AST":[77,139],"signal":[78],"summarized":[79],"as":[80],"label-agnostic":[81],"log2":[82],"MIC":[83],"tertiles.":[84],"Logistic":[85],"regression":[86],"random":[88],"forest":[89],"with":[91],"5-fold":[92],"stratified":[93],"CV":[94],"show":[95],"step-wise":[96],"gains:":[97],"LR":[98],"54.0%\u219262.0%":[99],"RF":[101],"59.5%\u219265.1%":[102],"balanced":[103],"accuracy":[104],"from":[105,111],"T1\u2192T4;":[106],"the":[107,128],"largest":[108],"jump":[109],"comes":[110],"adding":[112],"(T1\u2192T2).":[114],"Results":[115],"indicate":[116],"that":[117],"(i)":[118],"metadata":[120],"alone":[121],"insufficient;":[123],"(ii)":[124],"serotyping":[126],"provides":[127],"biggest":[129],"boost;":[130],"(iii)":[132],"coarse":[138],"summaries":[140],"yield":[141],"incremental":[142],"improvements.":[143],"This":[144],"tiered,":[145],"reproducible":[146],"setup":[147],"mirrors":[148],"data":[149],"availability":[150],"in":[151],"practice":[152],"can":[154],"guide":[155],"which":[156],"tests":[158],"to":[159],"prioritize":[160],"risk":[163],"triage,":[164],"especially":[165],"where":[166],"comprehensive":[167],"culture/NGS":[168],"delayed.":[170]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-12-10T00:00:00"}
