{"id":"https://openalex.org/W7113902548","doi":"https://doi.org/10.1145/3765612.3767762","title":"scMultiNODE: Integrative and Scalable Framework for Multi-Modal Temporal Single-Cell Data","display_name":"scMultiNODE: Integrative and Scalable Framework for Multi-Modal Temporal Single-Cell Data","publication_year":2025,"publication_date":"2025-10-12","ids":{"openalex":"https://openalex.org/W7113902548","doi":"https://doi.org/10.1145/3765612.3767762"},"language":null,"primary_location":{"id":"doi:10.1145/3765612.3767762","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3765612.3767762","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 16th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Jiaqi Zhang","orcid":"https://orcid.org/0000-0002-1649-3378"},"institutions":[{"id":"https://openalex.org/I27804330","display_name":"Brown University","ror":"https://ror.org/05gq02987","country_code":"US","type":"education","lineage":["https://openalex.org/I27804330"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jiaqi Zhang","raw_affiliation_strings":["Brown University, Providence, RI, USA"],"affiliations":[{"raw_affiliation_string":"Brown University, Providence, RI, USA","institution_ids":["https://openalex.org/I27804330"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Manav Chakravarthy","orcid":"https://orcid.org/0009-0000-8213-4632"},"institutions":[{"id":"https://openalex.org/I27804330","display_name":"Brown University","ror":"https://ror.org/05gq02987","country_code":"US","type":"education","lineage":["https://openalex.org/I27804330"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manav Chakravarthy","raw_affiliation_strings":["Brown University, Providence, RI, USA"],"affiliations":[{"raw_affiliation_string":"Brown University, Providence, RI, USA","institution_ids":["https://openalex.org/I27804330"]}]},{"author_position":"last","author":{"id":null,"display_name":"Ritambhara Singh","orcid":"https://orcid.org/0000-0002-7523-160X"},"institutions":[{"id":"https://openalex.org/I27804330","display_name":"Brown University","ror":"https://ror.org/05gq02987","country_code":"US","type":"education","lineage":["https://openalex.org/I27804330"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ritambhara Singh","raw_affiliation_strings":["Brown University, Providence, RI, USA"],"affiliations":[{"raw_affiliation_string":"Brown University, Providence, RI, USA","institution_ids":["https://openalex.org/I27804330"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I27804330"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.61006289,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.6407999992370605},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5565999746322632},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5109999775886536},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.28529998660087585},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.27720001339912415}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7174999713897705},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.6407999992370605},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5565999746322632},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5109999775886536},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.47380000352859497},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2937999963760376},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.28529998660087585},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.27720001339912415},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.272599995136261},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.25940001010894775},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.2529999911785126},{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.25110000371932983}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3765612.3767762","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3765612.3767762","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 16th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1196606655","display_name":null,"funder_award_id":"1R35HG011939-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Biological":[0],"systems":[1],"are":[2,83,98],"inherently":[3],"dynamic,":[4],"constantly":[5],"changing":[6],"and":[7,11,33,61,90,100,110],"adapting":[8],"over":[9],"time,":[10],"function":[12],"at":[13,42],"different":[14],"scales.":[15],"Recent":[16],"advances":[17],"in":[18,103],"single-cell":[19,81],"technologies":[20,93],"have":[21],"enabled":[22],"temporally":[23],"resolved,":[24],"multi-modal":[25,117],"measurements":[26],"(or":[27],"modalities)":[28],"such":[29],"as":[30],"gene":[31],"expression":[32],"chromatin":[34],"accessibility,":[35],"providing":[36],"unprecedented":[37],"opportunities":[38],"to":[39,58],"study":[40],"development":[41],"high":[43],"resolution.":[44],"However,":[45],"most":[46,106],"computational":[47],"approaches":[48],"analyze":[49],"only":[50,65],"one":[51,66],"modality,":[52],"which":[53],"limits":[54],"biological":[55],"insight":[56],"due":[57],"noise,":[59],"biases,":[60],"incomplete":[62],"information":[63],"from":[64],"modality.":[67],"While":[68],"integrating":[69,115],"multiple":[70],"modalities":[71,89],"offers":[72],"a":[73],"more":[74],"comprehensive":[75],"view,":[76],"this":[77,96],"remains":[78],"challenging":[79],"because":[80],"assays":[82],"destructive,":[84],"producing":[85],"\"unaligned\"":[86],"datasets":[87,108],"across":[88],"time.":[91],"Co-assay":[92],"partly":[94],"address":[95],"but":[97],"costly":[99],"often":[101],"limited":[102],"scale,":[104],"leaving":[105],"temporal":[107],"unaligned":[109,116],"highlighting":[111],"the":[112],"need":[113],"for":[114],"data.":[118]},"counts_by_year":[],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-12-11T00:00:00"}
