{"id":"https://openalex.org/W4415431132","doi":"https://doi.org/10.1145/3760544.3765634","title":"A CPU-GPU Hybrid Boundary-Based Algorithm for Accelerating Cellular Potts Model Simulations","display_name":"A CPU-GPU Hybrid Boundary-Based Algorithm for Accelerating Cellular Potts Model Simulations","publication_year":2025,"publication_date":"2025-10-22","ids":{"openalex":"https://openalex.org/W4415431132","doi":"https://doi.org/10.1145/3760544.3765634"},"language":null,"primary_location":{"id":"doi:10.1145/3760544.3765634","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3760544.3765634","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th Annual ACM International Conference on Nanoscale Computing and Communication","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101421108","display_name":"Jiewen Wang","orcid":"https://orcid.org/0000-0002-1747-1859"},"institutions":[{"id":"https://openalex.org/I4387152983","display_name":"Osaka Metropolitan University","ror":"https://ror.org/01hvx5h04","country_code":"JP","type":"education","lineage":["https://openalex.org/I4387152983"]},{"id":"https://openalex.org/I69740276","display_name":"Tokyo Metropolitan University","ror":"https://ror.org/00ws30h19","country_code":"JP","type":"education","lineage":["https://openalex.org/I69740276"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Jiewen Wang","raw_affiliation_strings":["Graduate School of Informatics, Osaka Metropolitan University, Osaka, Japan"],"raw_orcid":"https://orcid.org/0000-0002-1747-1859","affiliations":[{"raw_affiliation_string":"Graduate School of Informatics, Osaka Metropolitan University, Osaka, Japan","institution_ids":["https://openalex.org/I69740276","https://openalex.org/I4387152983"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005546566","display_name":"Tadashi Nakano","orcid":"https://orcid.org/0000-0003-3354-8964"},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tadashi Nakano","raw_affiliation_strings":["Graduate School of Informatics, Osaka Metropolitan University, Osaka, Osaka, Japan"],"raw_orcid":"https://orcid.org/0000-0003-3354-8964","affiliations":[{"raw_affiliation_string":"Graduate School of Informatics, Osaka Metropolitan University, Osaka, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5101421108"],"corresponding_institution_ids":["https://openalex.org/I4387152983","https://openalex.org/I69740276"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.30697259,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"155","last_page":"156"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12162","display_name":"Cellular Automata and Applications","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12162","display_name":"Cellular Automata and Applications","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11187","display_name":"Nonlinear Dynamics and Pattern Formation","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12100","display_name":"Advanced Mathematical Modeling in Engineering","score":0.9442999958992004,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.6644999980926514},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6154999732971191},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5817000269889832},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5777999758720398},{"id":"https://openalex.org/keywords/limiting","display_name":"Limiting","score":0.5139999985694885},{"id":"https://openalex.org/keywords/multicellular-organism","display_name":"Multicellular organism","score":0.4708999991416931},{"id":"https://openalex.org/keywords/reduction","display_name":"Reduction (mathematics)","score":0.37529999017715454}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6984999775886536},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.6644999980926514},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6154999732971191},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5817000269889832},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5777999758720398},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.5139999985694885},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4959999918937683},{"id":"https://openalex.org/C74318829","wikidata":"https://www.wikidata.org/wiki/Q36458","display_name":"Multicellular organism","level":3,"score":0.4708999991416931},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.38580000400543213},{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.37529999017715454},{"id":"https://openalex.org/C2778770139","wikidata":"https://www.wikidata.org/wiki/Q1966904","display_name":"Solver","level":2,"score":0.35670000314712524},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3393000066280365},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.30140000581741333},{"id":"https://openalex.org/C179799912","wikidata":"https://www.wikidata.org/wiki/Q205084","display_name":"Computational complexity theory","level":2,"score":0.296099990606308},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.2953000068664551},{"id":"https://openalex.org/C2742236","wikidata":"https://www.wikidata.org/wiki/Q924713","display_name":"Efficient energy use","level":2,"score":0.2833000123500824},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.2750999927520752},{"id":"https://openalex.org/C106516650","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm design","level":2,"score":0.25290000438690186},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.25270000100135803}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3760544.3765634","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3760544.3765634","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 12th Annual ACM International Conference on Nanoscale Computing and Communication","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2024161345","https://openalex.org/W2139802217","https://openalex.org/W2623620232"],"related_works":[],"abstract_inverted_index":{"The":[0],"Cellular":[1],"Potts":[2],"Model":[3],"(CPM)":[4],"is":[5],"a":[6,36,54,82,115],"lattice-based":[7],"computational":[8,33],"framework":[9],"for":[10],"simulating":[11,40],"tissue":[12],"dynamics":[13],"such":[14],"as":[15],"cell":[16,19,66,107],"sorting,":[17],"collective":[18],"migration,":[20],"and":[21,68,109,130],"morphogenesis.":[22],"While":[23],"the":[24,93,102,123],"model":[25],"effectively":[26],"captures":[27],"essential":[28],"biological":[29],"properties,":[30],"its":[31,97],"high":[32],"cost":[34],"poses":[35],"significant":[37],"challenge":[38],"when":[39],"large-scale":[41],"multicellular":[42,135],"systems":[43],"over":[44],"extended":[45],"simulation":[46],"times.":[47],"In":[48,73],"our":[49],"previous":[50],"work,":[51],"we":[52,76],"proposed":[53],"boundary-based":[55,85,125],"algorithm":[56],"that":[57],"reduces":[58],"computation":[59,119],"time":[60,120],"by":[61],"limiting":[62],"copy":[63],"attempts":[64],"to":[65,92,95,105,122],"boundaries":[67,108],"performing":[69],"local":[70,87],"energy":[71,88],"calculations.":[72],"this":[74],"paper,":[75],"further":[77],"accelerate":[78],"CPM":[79],"simulations":[80,132],"with":[81],"CPU-GPU":[83],"hybrid":[84],"algorithm:":[86],"calculations":[89],"are":[90],"offloaded":[91],"GPU":[94],"leverage":[96],"parallel":[98],"processing":[99],"capabilities,":[100],"while":[101],"CPU":[103],"continues":[104],"manage":[106],"connectivity":[110],"checks.":[111],"Benchmark":[112],"results":[113],"demonstrate":[114],"substantial":[116],"reduction":[117],"in":[118],"compared":[121],"CPU-based":[124],"algorithm,":[126],"enabling":[127],"more":[128],"efficient":[129],"scalable":[131],"of":[133],"complex":[134],"systems.":[136]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-24T00:00:00"}
