{"id":"https://openalex.org/W7116347814","doi":"https://doi.org/10.1145/3750720.3757294","title":"Automation and Collaboration in Complex Epidemiological Workflows with OSPREY","display_name":"Automation and Collaboration in Complex Epidemiological Workflows with OSPREY","publication_year":2025,"publication_date":"2025-09-08","ids":{"openalex":"https://openalex.org/W7116347814","doi":"https://doi.org/10.1145/3750720.3757294"},"language":null,"primary_location":{"id":"doi:10.1145/3750720.3757294","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3750720.3757294","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Workshop Proceedings of the 54th International Conference on Parallel Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3750720.3757294","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5120946144","display_name":"Jonathan Ozik","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jonathan Ozik","raw_affiliation_strings":["Argonne National Laboratory, Lemont, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Lemont, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064138452","display_name":"Nicholson Collier","orcid":"https://orcid.org/0000-0002-2376-4156"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholson Collier","raw_affiliation_strings":["Argonne National Laboratory, Lemont, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Lemont, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057409468","display_name":"Arindam Fadikar","orcid":"https://orcid.org/0000-0001-7396-0350"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arindam Fadikar","raw_affiliation_strings":["Argonne National Laboratory, Lemont, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Lemont, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020776475","display_name":"Justin M. Wozniak","orcid":"https://orcid.org/0000-0002-2441-2048"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Wozniak","raw_affiliation_strings":["Argonne National Laboratory, Lemont, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Lemont, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120906276","display_name":"Valerie Hayot-Sasson","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Valerie Hayot-Sasson","raw_affiliation_strings":["University of Chicago, Chicago, USA"],"affiliations":[{"raw_affiliation_string":"University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120929809","display_name":"Kyle Conroy","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle Conroy","raw_affiliation_strings":["University of Chicago, Chicago, USA"],"affiliations":[{"raw_affiliation_string":"University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065464552","display_name":"Kyle Chard","orcid":"https://orcid.org/0000-0002-7370-4805"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle Chard","raw_affiliation_strings":["University of Chicago, Chicago, USA"],"affiliations":[{"raw_affiliation_string":"University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120912709","display_name":"Jacqueline Wentz","orcid":null},"institutions":[{"id":"https://openalex.org/I192454743","display_name":"Sandia National Laboratories California","ror":"https://ror.org/058m7ey48","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1330989302","https://openalex.org/I192454743","https://openalex.org/I198811213","https://openalex.org/I198811213","https://openalex.org/I4210104735"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacqueline Wentz","raw_affiliation_strings":["Sandia National Laboratory, Livermore, USA"],"affiliations":[{"raw_affiliation_string":"Sandia National Laboratory, Livermore, USA","institution_ids":["https://openalex.org/I192454743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120911500","display_name":"Erin Acquesta","orcid":null},"institutions":[{"id":"https://openalex.org/I192454743","display_name":"Sandia National Laboratories California","ror":"https://ror.org/058m7ey48","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1330989302","https://openalex.org/I192454743","https://openalex.org/I198811213","https://openalex.org/I198811213","https://openalex.org/I4210104735"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erin Acquesta","raw_affiliation_strings":["Sandia National Laboratory, Livermore, USA"],"affiliations":[{"raw_affiliation_string":"Sandia National Laboratory, Livermore, USA","institution_ids":["https://openalex.org/I192454743"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075624899","display_name":"Jaideep Ray","orcid":"https://orcid.org/0009-0000-9908-7035"},"institutions":[{"id":"https://openalex.org/I192454743","display_name":"Sandia National Laboratories California","ror":"https://ror.org/058m7ey48","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1330989302","https://openalex.org/I192454743","https://openalex.org/I198811213","https://openalex.org/I198811213","https://openalex.org/I4210104735"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaideep Ray","raw_affiliation_strings":["Sandia National Laboratory, Livermore, USA"],"affiliations":[{"raw_affiliation_string":"Sandia National Laboratory, Livermore, USA","institution_ids":["https://openalex.org/I192454743"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5120946144"],"corresponding_institution_ids":["https://openalex.org/I1282105669"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.6375081,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"159","last_page":"166"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.3862000107765198,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.3862000107765198,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.21660000085830688,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T14509","display_name":"demographic modeling and climate adaptation","score":0.03440000116825104,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8230000138282776},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.5051000118255615},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48809999227523804},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.3652999997138977},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.33869999647140503},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.3292999863624573}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8230000138282776},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5523999929428101},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5353999733924866},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.5051000118255615},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48809999227523804},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.3652999997138977},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3587000072002411},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.33869999647140503},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.3292999863624573},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.3197999894618988},{"id":"https://openalex.org/C3017977704","wikidata":"https://www.wikidata.org/wiki/Q18745135","display_name":"Health data","level":3,"score":0.3075999915599823},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.30000001192092896},{"id":"https://openalex.org/C2984968299","wikidata":"https://www.wikidata.org/wiki/Q1077784","display_name":"Software tool","level":3,"score":0.29679998755455017},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.29420000314712524},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.28060001134872437},{"id":"https://openalex.org/C195094911","wikidata":"https://www.wikidata.org/wiki/Q14167904","display_name":"Process management","level":1,"score":0.2680000066757202},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.265500009059906}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3750720.3757294","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3750720.3757294","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Workshop Proceedings of the 54th International Conference on Parallel Processing","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3750720.3757294","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3750720.3757294","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Workshop Proceedings of the 54th International Conference on Parallel Processing","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1751644051","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G2649384494","display_name":null,"funder_award_id":"2200234","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W2097446414","https://openalex.org/W2149426898","https://openalex.org/W2592114463","https://openalex.org/W2753216119","https://openalex.org/W2995529484","https://openalex.org/W3021718926","https://openalex.org/W3111883190","https://openalex.org/W3199500355","https://openalex.org/W4235606958","https://openalex.org/W4283074439","https://openalex.org/W4318718584","https://openalex.org/W4385585547","https://openalex.org/W4386330835","https://openalex.org/W4386585106","https://openalex.org/W4386592919","https://openalex.org/W4389352236","https://openalex.org/W4391179931","https://openalex.org/W4406612967","https://openalex.org/W4410109790","https://openalex.org/W4414581310"],"related_works":[],"abstract_inverted_index":{"Epidemiological":[0],"modeling,":[1,104],"a":[2,9,12,68],"powerful":[3],"tool":[4],"for":[5,35,73,102,115,125],"supporting":[6,126],"decision-making":[7,129],"during":[8],"pandemic,":[10],"is":[11],"workflow":[13],"problem":[14],"that":[15],"incorporates":[16],"data":[17,21,59,98],"management":[18],"of":[19,56,67,87,89],"real-time":[20,97],"streams,":[22],"large-scale":[23],"simulation":[24],"and":[25,27,62,64,85,100,130],"analysis,":[26],"complex":[28],"software":[29],"integrations.":[30],"The":[31,92],"Open":[32],"Science":[33],"Platform":[34],"Robust":[36],"Epidemic":[37],"Analysis":[38],"(OSPREY)":[39],"was":[40],"introduced":[41],"to":[42,81,121],"address":[43],"critical":[44],"gaps":[45],"in":[46],"this":[47],"challenging":[48],"scientific":[49],"application.":[50],"This":[51],"paper":[52],"explores":[53],"the":[54,65,83,106],"capabilities":[55,124],"OSPREY":[57],"regarding":[58],"ingestion,":[60],"curation,":[61],"management,":[63],"development":[66],"Shared":[69],"Development":[70],"Environment":[71],"(SDE)":[72],"rapid":[74],"collaboration.":[75],"We":[76],"present":[77],"two":[78],"use":[79,94],"cases":[80],"demonstrate":[82],"implementation":[84],"impact":[86],"each":[88],"these":[90],"goals.":[91],"first":[93],"case":[95],"highlights":[96],"ingestion":[99],"curation":[101],"epidemiologic":[103],"while":[105],"second":[107],"focuses":[108],"on":[109],"developing":[110],"efficient":[111],"global":[112],"sensitivity":[113],"analyses":[114],"epidemic":[116],"models.":[117],"These":[118],"advancements":[119],"aim":[120],"enhance":[122],"OSPREY\u2019s":[123],"public":[127],"health":[128],"reproducible":[131],"science.":[132]},"counts_by_year":[],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-12-21T00:00:00"}
