{"id":"https://openalex.org/W7164032505","doi":"https://doi.org/10.1145/3748522.3779728","title":"Accelerating RNA-Seq Pseudoalignment via NAND Flash-based In-Memory-Searching Architecture","display_name":"Accelerating RNA-Seq Pseudoalignment via NAND Flash-based In-Memory-Searching Architecture","publication_year":2026,"publication_date":"2026-03-23","ids":{"openalex":"https://openalex.org/W7164032505","doi":"https://doi.org/10.1145/3748522.3779728"},"language":null,"primary_location":{"id":"doi:10.1145/3748522.3779728","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3748522.3779728","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 41st ACM/SIGAPP Symposium on Applied Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5138264626","display_name":"Guan-De Jiang","orcid":"https://orcid.org/0009-0004-3641-0412"},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Guan-De Jiang","raw_affiliation_strings":["Computer Science and Information Engineering, National Cheng Kung University, Tainan City, Taiwan"],"raw_orcid":"https://orcid.org/0009-0004-3641-0412","affiliations":[{"raw_affiliation_string":"Computer Science and Information Engineering, National Cheng Kung University, Tainan City, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101695604","display_name":"Ying\u2010Sheng Huang","orcid":"https://orcid.org/0000-0002-4099-0673"},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ying-Sheng Huang","raw_affiliation_strings":["Computer Science and Information Engineering, National Cheng Kung University, Tainan City, Taiwan"],"raw_orcid":"https://orcid.org/0009-0005-2604-9421","affiliations":[{"raw_affiliation_string":"Computer Science and Information Engineering, National Cheng Kung University, Tainan City, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056850965","display_name":"Liang-Chi Chen","orcid":"https://orcid.org/0000-0003-2579-4305"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Liang-Chi Chen","raw_affiliation_strings":["Computer Science and Information Engineering, National Taiwan University, Taipei City, Taiwan"],"raw_orcid":"https://orcid.org/0000-0003-2579-4305","affiliations":[{"raw_affiliation_string":"Computer Science and Information Engineering, National Taiwan University, Taipei City, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044099250","display_name":"Chien-Chung Ho","orcid":"https://orcid.org/0000-0003-3460-8674"},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chien-Chung Ho","raw_affiliation_strings":["Computer Science and Information Engineering, National Cheng Kung University, Tainan City, Taiwan"],"raw_orcid":"https://orcid.org/0000-0003-3460-8674","affiliations":[{"raw_affiliation_string":"Computer Science and Information Engineering, National Cheng Kung University, Tainan City, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5138264626"],"corresponding_institution_ids":["https://openalex.org/I91807558"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.90986703,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"635","last_page":"642"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.41440001130104065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.41440001130104065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.16449999809265137,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.07050000131130219,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.2921999990940094},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.25839999318122864},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.25279998779296875},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.24070000648498535},{"id":"https://openalex.org/keywords/systems-architecture","display_name":"Systems architecture","score":0.23080000281333923}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6039000153541565},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.2921999990940094},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.2912999987602234},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.25839999318122864},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.25279998779296875},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.24320000410079956},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.24070000648498535},{"id":"https://openalex.org/C98025372","wikidata":"https://www.wikidata.org/wiki/Q477538","display_name":"Systems architecture","level":3,"score":0.23080000281333923},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.23029999434947968},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.225600004196167}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3748522.3779728","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3748522.3779728","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 41st ACM/SIGAPP Symposium on Applied Computing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W2323326409","https://openalex.org/W2982008795","https://openalex.org/W3139269722","https://openalex.org/W3189270397","https://openalex.org/W3205140122","https://openalex.org/W3211961913","https://openalex.org/W4214923637","https://openalex.org/W4281564544","https://openalex.org/W4286571904","https://openalex.org/W4297098423","https://openalex.org/W4308083751","https://openalex.org/W4380356701","https://openalex.org/W4385192561","https://openalex.org/W4386764197","https://openalex.org/W4404102520","https://openalex.org/W4408530689","https://openalex.org/W4411471852","https://openalex.org/W4414198693","https://openalex.org/W4416963256"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-10T14:10:52.464848","created_date":"2026-06-10T00:00:00"}
