{"id":"https://openalex.org/W4411563276","doi":"https://doi.org/10.1145/3744660","title":"Harnessing Large Language Models for Clinical Information Extraction: A Systematic Literature Review","display_name":"Harnessing Large Language Models for Clinical Information Extraction: A Systematic Literature Review","publication_year":2025,"publication_date":"2025-06-23","ids":{"openalex":"https://openalex.org/W4411563276","doi":"https://doi.org/10.1145/3744660"},"language":"en","primary_location":{"id":"doi:10.1145/3744660","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3744660","pdf_url":null,"source":{"id":"https://openalex.org/S4210174653","display_name":"ACM Transactions on Computing for Healthcare","issn_l":"2637-8051","issn":["2637-8051","2691-1957"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Computing for Healthcare","raw_type":"journal-article"},"type":"review","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103441236","display_name":"T. N. S. S. Rodrigues","orcid":"https://orcid.org/0009-0009-0178-3901"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]},{"id":"https://openalex.org/I4210166615","display_name":"INESC TEC","ror":"https://ror.org/05fa8ka61","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125590","https://openalex.org/I4210166615"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Tiago Rodrigues","raw_affiliation_strings":["Faculty of Engineering, University of Porto, Porto, Portugal and INESC TEC, Porto, Portugal","Faculdade de Engenharia da Universidade do Porto, INESC TEC, Portugal"],"raw_orcid":"https://orcid.org/0009-0009-0178-3901","affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Porto, Porto, Portugal and INESC TEC, Porto, Portugal","institution_ids":["https://openalex.org/I182534213","https://openalex.org/I4210166615"]},{"raw_affiliation_string":"Faculdade de Engenharia da Universidade do Porto, INESC TEC, Portugal","institution_ids":["https://openalex.org/I182534213","https://openalex.org/I4210166615"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061671893","display_name":"Carla Teixeira Lopes","orcid":"https://orcid.org/0000-0002-4202-791X"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]},{"id":"https://openalex.org/I4210166615","display_name":"INESC TEC","ror":"https://ror.org/05fa8ka61","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125590","https://openalex.org/I4210166615"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Carla Teixeira Lopes","raw_affiliation_strings":["Faculty of Engineering, University of Porto, Porto, Portugal and INESC TEC, Porto, Portugal","Faculdade de Engenharia da Universidade do Porto, INESC TEC, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-4202-791X","affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Porto, Porto, Portugal and INESC TEC, Porto, Portugal","institution_ids":["https://openalex.org/I182534213","https://openalex.org/I4210166615"]},{"raw_affiliation_string":"Faculdade de Engenharia da Universidade do Porto, INESC TEC, Portugal","institution_ids":["https://openalex.org/I182534213","https://openalex.org/I4210166615"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.8726,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.88129195,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"6","issue":"4","first_page":"1","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5384715795516968},{"id":"https://openalex.org/keywords/systematic-review","display_name":"Systematic review","score":0.4776134192943573},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4477350115776062},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.43532779812812805},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4144771099090576},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.37822267413139343},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3397257924079895},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.2765697240829468},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.12010520696640015},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.07482093572616577}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5384715795516968},{"id":"https://openalex.org/C189708586","wikidata":"https://www.wikidata.org/wiki/Q1504425","display_name":"Systematic review","level":3,"score":0.4776134192943573},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4477350115776062},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.43532779812812805},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4144771099090576},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.37822267413139343},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3397257924079895},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.2765697240829468},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.12010520696640015},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.07482093572616577},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3744660","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3744660","pdf_url":null,"source":{"id":"https://openalex.org/S4210174653","display_name":"ACM Transactions on Computing for Healthcare","issn_l":"2637-8051","issn":["2637-8051","2691-1957"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Computing for Healthcare","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":95,"referenced_works":["https://openalex.org/W1791866474","https://openalex.org/W2052217781","https://openalex.org/W2075390579","https://openalex.org/W2101105183","https://openalex.org/W2109206523","https://openalex.org/W2114039834","https://openalex.org/W2129767020","https://openalex.org/W2137407193","https://openalex.org/W2168041406","https://openalex.org/W2169099542","https://openalex.org/W2170189740","https://openalex.org/W2768488789","https://openalex.org/W2915128229","https://openalex.org/W2978511610","https://openalex.org/W2985294119","https://openalex.org/W2991358176","https://openalex.org/W2994804941","https://openalex.org/W2996428491","https://openalex.org/W2997712488","https://openalex.org/W3002226419","https://openalex.org/W3003406981","https://openalex.org/W3004844052","https://openalex.org/W3010362629","https://openalex.org/W3013605954","https://openalex.org/W3021010716","https://openalex.org/W3023618320","https://openalex.org/W3037250227","https://openalex.org/W3039276721","https://openalex.org/W3046476585","https://openalex.org/W3080429061","https://openalex.org/W3080691086","https://openalex.org/W3091382176","https://openalex.org/W3101118213","https://openalex.org/W3106597088","https://openalex.org/W3113662377","https://openalex.org/W3116945626","https://openalex.org/W3118615836","https://openalex.org/W3123893780","https://openalex.org/W3130158965","https://openalex.org/W3164477379","https://openalex.org/W3193292944","https://openalex.org/W3205009295","https://openalex.org/W3205462295","https://openalex.org/W3207948699","https://openalex.org/W3208182228","https://openalex.org/W3214234195","https://openalex.org/W3215317537","https://openalex.org/W4200136492","https://openalex.org/W4221143384","https://openalex.org/W4231934124","https://openalex.org/W4281644150","https://openalex.org/W4283689910","https://openalex.org/W4287208373","https://openalex.org/W4287854693","https://openalex.org/W4288088047","https://openalex.org/W4297347697","https://openalex.org/W4304697829","https://openalex.org/W4306639554","https://openalex.org/W4307313182","https://openalex.org/W4308590518","https://openalex.org/W4310522573","https://openalex.org/W4312124100","https://openalex.org/W4312220150","https://openalex.org/W4313597114","https://openalex.org/W4319304435","https://openalex.org/W4320727363","https://openalex.org/W4321222404","https://openalex.org/W4322718777","https://openalex.org/W4327670644","https://openalex.org/W4361020002","https://openalex.org/W4377091235","https://openalex.org/W4377093904","https://openalex.org/W4377294672","https://openalex.org/W4379336504","https://openalex.org/W4383567279","https://openalex.org/W4384389802","https://openalex.org/W4385208663","https://openalex.org/W4385714363","https://openalex.org/W4385714479","https://openalex.org/W4386419472","https://openalex.org/W4386932783","https://openalex.org/W4387163409","https://openalex.org/W4387197005","https://openalex.org/W4387560865","https://openalex.org/W4387846020","https://openalex.org/W4388195809","https://openalex.org/W4389885297","https://openalex.org/W4391250170","https://openalex.org/W4391429579","https://openalex.org/W4393704672","https://openalex.org/W6903655558","https://openalex.org/W6927006525","https://openalex.org/W6959643953","https://openalex.org/W6960038822","https://openalex.org/W6967763158"],"related_works":["https://openalex.org/W2395691387","https://openalex.org/W2792383399","https://openalex.org/W3024289321","https://openalex.org/W2766255174","https://openalex.org/W4200400515","https://openalex.org/W2938724434","https://openalex.org/W4200615155","https://openalex.org/W4320717566","https://openalex.org/W4322495751","https://openalex.org/W2368651715"],"abstract_inverted_index":{"Electronic":[0],"Health":[1],"Records":[2],"store":[3],"extensive":[4],"patient":[5],"health":[6],"data,":[7],"playing":[8],"a":[9,136],"crucial":[10],"role":[11],"in":[12,35,44,51,62,103,122],"healthcare":[13],"management.":[14],"Extracting":[15],"information":[16],"from":[17],"these":[18,60],"text-heavy":[19],"records":[20],"is":[21],"difficult":[22],"due":[23],"to":[24],"their":[25],"domain-specific":[26],"vocabulary,":[27],"which":[28],"challenges":[29],"applying":[30],"general-domain":[31],"techniques.":[32],"Recent":[33],"advancements":[34],"Large":[36],"Language":[37],"Models":[38],"(LLMs)":[39],"and":[40,73,77,85,113],"an":[41],"increasing":[42],"interest":[43],"the":[45,66,87,104,131],"field":[46],"have":[47],"sparked":[48],"considerable":[49],"progress":[50],"solving":[52],"Clinical":[53,63,132],"Information":[54],"Extraction":[55],"(IE)":[56],"tasks.":[57],"We":[58],"review":[59],"applications":[61],"IE,":[64],"highlighting":[65,91],"most":[67,70,74,105],"common":[68,92,106],"tasks,":[69,107],"successful":[71],"methods,":[72],"used":[75],"datasets":[76],"evaluation":[78],"criteria.":[79],"Examining":[80],"85":[81],"studies,":[82],"we":[83],"synthesize":[84],"organize":[86],"current":[88],"research":[89],"trends,":[90],"points":[93],"between":[94],"papers.":[95],"The":[96],"presence":[97],"of":[98],"LLMs":[99],"can":[100,128],"be":[101],"felt":[102],"with":[108],"novel":[109],"approaches":[110],"being":[111],"attempted":[112],"showing":[114],"promising":[115],"results.":[116],"However,":[117],"breakthroughs":[118],"are":[119],"still":[120],"necessary":[121],"designing":[123],"reliable":[124],"end-to-end":[125],"systems":[126],"that":[127],"perform":[129],"all":[130],"IE":[133],"tasks":[134],"within":[135],"single":[137],"system.":[138]},"counts_by_year":[{"year":2026,"cited_by_count":5}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
