{"id":"https://openalex.org/W4411098042","doi":"https://doi.org/10.1145/3723178.3723230","title":"Utilizing Kidney Ontology for Data-Driven Exploration of Potential Biomarkers in Kidney Diseases: Introducing the Kidney Diseases Biomarker Ontology (KDBO)","display_name":"Utilizing Kidney Ontology for Data-Driven Exploration of Potential Biomarkers in Kidney Diseases: Introducing the Kidney Diseases Biomarker Ontology (KDBO)","publication_year":2024,"publication_date":"2024-10-17","ids":{"openalex":"https://openalex.org/W4411098042","doi":"https://doi.org/10.1145/3723178.3723230"},"language":"en","primary_location":{"id":"doi:10.1145/3723178.3723230","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3723178.3723230","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3723178.3723230","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 3rd International Conference on Computing Advancements","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3723178.3723230","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093631345","display_name":"Arjun Kumar Bose Arnob","orcid":"https://orcid.org/0009-0003-2244-2328"},"institutions":[{"id":"https://openalex.org/I103434671","display_name":"American International University-Bangladesh","ror":"https://ror.org/02j8ga255","country_code":"BD","type":"education","lineage":["https://openalex.org/I103434671"]}],"countries":["BD"],"is_corresponding":true,"raw_author_name":"Arjun Kumar Bose Arnob","raw_affiliation_strings":["Department of Computer Science, American International University-Bangladesh, Dhaka, Bangladesh"],"raw_orcid":"https://orcid.org/0009-0003-2244-2328","affiliations":[{"raw_affiliation_string":"Department of Computer Science, American International University-Bangladesh, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I103434671"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mostaque Ahammed Naim","orcid":"https://orcid.org/0009-0004-3030-6497"},"institutions":[{"id":"https://openalex.org/I103434671","display_name":"American International University-Bangladesh","ror":"https://ror.org/02j8ga255","country_code":"BD","type":"education","lineage":["https://openalex.org/I103434671"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Mostaque Ahammed Naim","raw_affiliation_strings":["Department of Computer Science, American International University-Bangladesh, Dhaka, Bangladesh"],"raw_orcid":"https://orcid.org/0009-0004-3030-6497","affiliations":[{"raw_affiliation_string":"Department of Computer Science, American International University-Bangladesh, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I103434671"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056916981","display_name":"Md. Symum Rezwan","orcid":null},"institutions":[{"id":"https://openalex.org/I103434671","display_name":"American International University-Bangladesh","ror":"https://ror.org/02j8ga255","country_code":"BD","type":"education","lineage":["https://openalex.org/I103434671"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Md Tahmid Rezwan","raw_affiliation_strings":["Department of Computer Science, American International University-Bangladesh, Dhaka, Bangladesh"],"raw_orcid":"https://orcid.org/0009-0001-0101-7539","affiliations":[{"raw_affiliation_string":"Department of Computer Science, American International University-Bangladesh, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I103434671"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070795925","display_name":"Mohammad Mahmudul Hasan","orcid":"https://orcid.org/0000-0002-9340-5466"},"institutions":[{"id":"https://openalex.org/I103434671","display_name":"American International University-Bangladesh","ror":"https://ror.org/02j8ga255","country_code":"BD","type":"education","lineage":["https://openalex.org/I103434671"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Mohammad Mahmudul Hasan","raw_affiliation_strings":["Department of Computer Science, American International University-Bangladesh, Dhaka, Bangladesh"],"raw_orcid":"https://orcid.org/0000-0002-9340-5466","affiliations":[{"raw_affiliation_string":"Department of Computer Science, American International University-Bangladesh, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I103434671"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5093631345"],"corresponding_institution_ids":["https://openalex.org/I103434671"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22380089,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"391","last_page":"398"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9394000172615051,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8222041726112366},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.6351384520530701},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6100701093673706},{"id":"https://openalex.org/keywords/kidney","display_name":"Kidney","score":0.5919393301010132},{"id":"https://openalex.org/keywords/kidney-cancer","display_name":"Kidney cancer","score":0.4785079061985016},{"id":"https://openalex.org/keywords/kidney-disease","display_name":"Kidney disease","score":0.3969661593437195},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.37896981835365295},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.22004440426826477},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09876900911331177}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8222041726112366},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.6351384520530701},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6100701093673706},{"id":"https://openalex.org/C2780091579","wikidata":"https://www.wikidata.org/wiki/Q9377","display_name":"Kidney","level":2,"score":0.5919393301010132},{"id":"https://openalex.org/C2781068499","wikidata":"https://www.wikidata.org/wiki/Q3242950","display_name":"Kidney cancer","level":3,"score":0.4785079061985016},{"id":"https://openalex.org/C2778653478","wikidata":"https://www.wikidata.org/wiki/Q1054718","display_name":"Kidney disease","level":2,"score":0.3969661593437195},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.37896981835365295},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.22004440426826477},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09876900911331177},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3723178.3723230","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3723178.3723230","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3723178.3723230","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 3rd International Conference on Computing Advancements","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3723178.3723230","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3723178.3723230","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3723178.3723230","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 3rd International Conference on Computing Advancements","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411098042.pdf","grobid_xml":"https://content.openalex.org/works/W4411098042.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1022120212","https://openalex.org/W1948465343","https://openalex.org/W1964809670","https://openalex.org/W1964986019","https://openalex.org/W1998412421","https://openalex.org/W2016615097","https://openalex.org/W2029432295","https://openalex.org/W2041447039","https://openalex.org/W2078817479","https://openalex.org/W2106361952","https://openalex.org/W2146607353","https://openalex.org/W2157002396","https://openalex.org/W2157373537","https://openalex.org/W2507374209","https://openalex.org/W2617512245","https://openalex.org/W2801297032","https://openalex.org/W2912896401","https://openalex.org/W2970026690","https://openalex.org/W2983335475","https://openalex.org/W3087585143","https://openalex.org/W3131249490","https://openalex.org/W3134344866","https://openalex.org/W4282930798"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W2533581028","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W2090817358","https://openalex.org/W2804669904","https://openalex.org/W2111160383","https://openalex.org/W2017668100","https://openalex.org/W2397742478"],"abstract_inverted_index":{"This":[0],"study":[1,18,93],"proposes":[2],"a":[3],"new":[4,75],"method":[5],"of":[6,39,65,108,112],"identifying":[7],"possible":[8],"kidney":[9,97],"disease":[10,67,113],"biomarkers":[11,55],"using":[12],"Kidney":[13,35],"Diseases":[14],"Biomarker":[15],"Ontology":[16,41],"(KDBO).This":[17],"classically":[19],"merges":[20],"clinical":[21],"imaging,":[22],"biopsy":[23],"data,":[24],"proteomics,":[25],"and":[26,47,79,102,125],"genomic":[27],"data":[28],"derived":[29],"from":[30],"various":[31],"sources":[32],"through":[33],"the":[34,66,74,80],"Development":[36],"Subontology":[37],"(KDSO)":[38],"Gene":[40],"(GO).Machine":[42],"learning":[43],"algorithms,":[44],"network":[45],"analysis,":[46],"statistical":[48],"approaches":[49],"are":[50],"used":[51],"to":[52,89,122],"identify":[53],"novel":[54],"that":[56,95],"have":[57,68],"implications":[58],"for":[59,128],"renal":[60,123],"impairment":[61],"at":[62],"different":[63],"stages":[64],"been":[69],"employed":[70],"here.A":[71],"comparison":[72],"between":[73],"upstart":[76],"markers":[77,83],"found":[78],"available":[81],"right":[82],"was":[84],"made":[85],"in":[86],"patient":[87],"cohorts":[88],"confirm":[90],"their":[91],"accuracy.The":[92],"showed":[94],"employing":[96],"ontology":[98],"improves":[99],"diagnosis,":[100],"prognosis,":[101],"treatment":[103],"by":[104],"facilitating":[105],"earlier":[106],"identification":[107],"dysfunction,":[109],"precise":[110],"evaluation":[111],"severity":[114],"levels,":[115],"tailored":[116],"choice":[117],"therapy,":[118],"addressing":[119],"issues":[120],"related":[121],"ontologies,":[124],"presenting":[126],"suggestions":[127],"future":[129],"studies.":[130]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}