{"id":"https://openalex.org/W4413430245","doi":"https://doi.org/10.1145/3721145.3729516","title":"G^3SA: A GPU-Accelerated Gold Standard Genomics Library for End-to-End Sequence Alignment","display_name":"G^3SA: A GPU-Accelerated Gold Standard Genomics Library for End-to-End Sequence Alignment","publication_year":2025,"publication_date":"2025-06-08","ids":{"openalex":"https://openalex.org/W4413430245","doi":"https://doi.org/10.1145/3721145.3729516"},"language":"en","primary_location":{"id":"doi:10.1145/3721145.3729516","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3721145.3729516","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 39th ACM International Conference on Supercomputing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3721145.3729516","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069793930","display_name":"Yu-Yeon Han","orcid":"https://orcid.org/0009-0006-7162-8454"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Yeejoo Han","raw_affiliation_strings":["Seoul National University, Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Seoul National University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057713745","display_name":"Seryun Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sunwoo Kim","raw_affiliation_strings":["Seoul National University, Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Seoul National University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010111672","display_name":"Seongyeon Park","orcid":"https://orcid.org/0009-0007-3480-6626"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seongyeon Park","raw_affiliation_strings":["Seoul National University, Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Seoul National University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100447633","display_name":"Jinho Lee","orcid":"https://orcid.org/0000-0003-4010-6611"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jinho Lee","raw_affiliation_strings":["Seoul National University, Seoul, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Seoul National University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5069793930"],"corresponding_institution_ids":["https://openalex.org/I139264467"],"apc_list":null,"apc_paid":null,"fwci":0.8979,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.77678366,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"173","last_page":"188"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/end-to-end-principle","display_name":"End-to-end principle","score":0.667859673500061},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6231090426445007},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.511604368686676},{"id":"https://openalex.org/keywords/gold-standard","display_name":"Gold standard (test)","score":0.4760929346084595},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4208643436431885},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2067776620388031},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.14007604122161865},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13731053471565247},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13616177439689636}],"concepts":[{"id":"https://openalex.org/C74296488","wikidata":"https://www.wikidata.org/wiki/Q2527392","display_name":"End-to-end principle","level":2,"score":0.667859673500061},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6231090426445007},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.511604368686676},{"id":"https://openalex.org/C40993552","wikidata":"https://www.wikidata.org/wiki/Q514654","display_name":"Gold standard (test)","level":2,"score":0.4760929346084595},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4208643436431885},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2067776620388031},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.14007604122161865},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13731053471565247},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13616177439689636},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3721145.3729516","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3721145.3729516","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 39th ACM International Conference on Supercomputing","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3721145.3729516","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3721145.3729516","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 39th ACM International Conference on Supercomputing","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":78,"referenced_works":["https://openalex.org/W1573897044","https://openalex.org/W1850429294","https://openalex.org/W1884334805","https://openalex.org/W1919257374","https://openalex.org/W1964587468","https://openalex.org/W1968230414","https://openalex.org/W1982088757","https://openalex.org/W1992519395","https://openalex.org/W1999887682","https://openalex.org/W2015831381","https://openalex.org/W2015915218","https://openalex.org/W2054828365","https://openalex.org/W2068519185","https://openalex.org/W2074231493","https://openalex.org/W2079900503","https://openalex.org/W2087064593","https://openalex.org/W2091519884","https://openalex.org/W2101305463","https://openalex.org/W2102443632","https://openalex.org/W2103441770","https://openalex.org/W2104816742","https://openalex.org/W2107824361","https://openalex.org/W2115069592","https://openalex.org/W2115324785","https://openalex.org/W2116715773","https://openalex.org/W2117500226","https://openalex.org/W2117683095","https://openalex.org/W2132967231","https://openalex.org/W2139760555","https://openalex.org/W2144031643","https://openalex.org/W2144560237","https://openalex.org/W2170551349","https://openalex.org/W2171309014","https://openalex.org/W2194172909","https://openalex.org/W2344543892","https://openalex.org/W2396849069","https://openalex.org/W2567652848","https://openalex.org/W2762638728","https://openalex.org/W2789843538","https://openalex.org/W2797956284","https://openalex.org/W2935576241","https://openalex.org/W2950629094","https://openalex.org/W2964045878","https://openalex.org/W2971559821","https://openalex.org/W2981619930","https://openalex.org/W2987272691","https://openalex.org/W2988628263","https://openalex.org/W3027691007","https://openalex.org/W3043148535","https://openalex.org/W3049762379","https://openalex.org/W3081168214","https://openalex.org/W3084730237","https://openalex.org/W3092652421","https://openalex.org/W3099458570","https://openalex.org/W3105003914","https://openalex.org/W3177047120","https://openalex.org/W3213656100","https://openalex.org/W4214546858","https://openalex.org/W4214950926","https://openalex.org/W4220774606","https://openalex.org/W4225399233","https://openalex.org/W4241026011","https://openalex.org/W4280536779","https://openalex.org/W4281294112","https://openalex.org/W4282554945","https://openalex.org/W4285503893","https://openalex.org/W4288069332","https://openalex.org/W4292240213","https://openalex.org/W4311803917","https://openalex.org/W4320067979","https://openalex.org/W4324292875","https://openalex.org/W4386604401","https://openalex.org/W4388754285","https://openalex.org/W4391983713","https://openalex.org/W4393236083","https://openalex.org/W4400519474","https://openalex.org/W4403998417","https://openalex.org/W4408049599"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2151749779","https://openalex.org/W3179968364","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
