{"id":"https://openalex.org/W4411029088","doi":"https://doi.org/10.1145/3715020.3715049","title":"Algorithm Selection for Protein Structure Prediction on 2D AB Off-lattice Model","display_name":"Algorithm Selection for Protein Structure Prediction on 2D AB Off-lattice Model","publication_year":2024,"publication_date":"2024-11-28","ids":{"openalex":"https://openalex.org/W4411029088","doi":"https://doi.org/10.1145/3715020.3715049"},"language":"en","primary_location":{"id":"doi:10.1145/3715020.3715049","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3715020.3715049","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3715020.3715049","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2024 8th International Conference on Computational Biology and Bioinformatics","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3715020.3715049","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024551178","display_name":"Mustafa M\u0131s\u0131r","orcid":"https://orcid.org/0000-0002-6885-6775"},"institutions":[{"id":"https://openalex.org/I4210159968","display_name":"Duke Kunshan University","ror":"https://ror.org/04sr5ys16","country_code":"CN","type":"education","lineage":["https://openalex.org/I170897317","https://openalex.org/I37461747","https://openalex.org/I4210159968"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Mustafa Misir","raw_affiliation_strings":["Duke Kunshan University, Kunshan, Jiangsu, China"],"raw_orcid":"https://orcid.org/0000-0002-6885-6775","affiliations":[{"raw_affiliation_string":"Duke Kunshan University, Kunshan, Jiangsu, China","institution_ids":["https://openalex.org/I4210159968"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5024551178"],"corresponding_institution_ids":["https://openalex.org/I4210159968"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.37097735,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"75","last_page":"83"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5938809514045715},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5130268335342407},{"id":"https://openalex.org/keywords/lattice","display_name":"Lattice (music)","score":0.5016179084777832},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4679730534553528},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.42489153146743774},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3938480317592621},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.22715309262275696},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13037848472595215},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.11446970701217651}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5938809514045715},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5130268335342407},{"id":"https://openalex.org/C2781204021","wikidata":"https://www.wikidata.org/wiki/Q6497091","display_name":"Lattice (music)","level":2,"score":0.5016179084777832},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4679730534553528},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.42489153146743774},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3938480317592621},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.22715309262275696},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13037848472595215},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.11446970701217651},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3715020.3715049","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3715020.3715049","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3715020.3715049","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2024 8th International Conference on Computational Biology and Bioinformatics","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3715020.3715049","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3715020.3715049","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3715020.3715049","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2024 8th International Conference on Computational Biology and Bioinformatics","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411029088.pdf","grobid_xml":"https://content.openalex.org/works/W4411029088.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1258972194","https://openalex.org/W1271512945","https://openalex.org/W1854810044","https://openalex.org/W1972278817","https://openalex.org/W1976869909","https://openalex.org/W1987971958","https://openalex.org/W1988385727","https://openalex.org/W1988804772","https://openalex.org/W2002616263","https://openalex.org/W2039906176","https://openalex.org/W2057457236","https://openalex.org/W2078841894","https://openalex.org/W2092191385","https://openalex.org/W2110325328","https://openalex.org/W2132094707","https://openalex.org/W2151554678","https://openalex.org/W2219036994","https://openalex.org/W2336179156","https://openalex.org/W2344850686","https://openalex.org/W2563364594","https://openalex.org/W2580936367","https://openalex.org/W2898364362","https://openalex.org/W2898873842","https://openalex.org/W2911964244","https://openalex.org/W3004042307","https://openalex.org/W3177828909","https://openalex.org/W3184302937","https://openalex.org/W4210958064","https://openalex.org/W4246565613","https://openalex.org/W4323309784","https://openalex.org/W4327550249","https://openalex.org/W4361228745","https://openalex.org/W4377293862"],"related_works":["https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W4409439182","https://openalex.org/W2053286651","https://openalex.org/W2181743346","https://openalex.org/W2187401768","https://openalex.org/W2181413294","https://openalex.org/W2052122378","https://openalex.org/W2544423928","https://openalex.org/W4205762803"],"abstract_inverted_index":{"The":[0],"present":[1],"study":[2],"performs":[3],"Algorithm":[4,152],"Selection":[5,153],"for":[6,18,62,112,134,162],"Protein":[7,25],"Structure":[8,26],"Prediction.The":[9],"idea":[10],"is":[11,29,46,66,110,139],"to":[12,170,187],"automatically":[13],"determine":[14],"the":[15,33,49,93,98,114,136,172,175],"best":[16],"algorithm":[17,68],"each":[19],"given":[20,41],"instance":[21,108,121],"through":[22],"performance":[23,177],"prediction.The":[24],"Prediction":[27],"problem":[28,74,107,146],"concerned":[30],"with":[31,141,165],"exploring":[32],"3D":[34,51],"shape":[35],"of":[36,106,125],"a":[37,86,123,159],"protein":[38],"from":[39,92],"any":[40],"amino":[42],"acid":[43],"sequence.This":[44],"task":[45],"critical":[47],"as":[48],"proteins'":[50],"structures":[52],"can":[53,70,154,181],"reflect":[54],"their":[55],"behaviour.There":[56],"are":[57,131,178,193],"already":[58],"different":[59],"algorithmic":[60],"solutions":[61],"this":[63,81,83],"problem.However,":[64],"there":[65],"no":[67],"that":[69,151],"effectively":[71],"address":[72],"varying":[73],"instances,":[75],"under":[76],"fair":[77],"experimental":[78],"conditions.Focusing":[79],"on":[80,97,196],"gap,":[82],"work":[84],"offers":[85],"simple":[87,104,166],"yet":[88],"practical":[89],"approach":[90,138],"benefiting":[91],"existing":[94,126],"algorithms,":[95],"working":[96],"2D":[99],"AB":[100],"off-lattice":[101],"model":[102],"representation.A":[103],"set":[105],"features":[109],"introduced":[111],"performing":[113],"selection":[115],"operations.Besides":[116],"these":[117],"cheap":[118],"and":[119],"straightforward":[120],"attributes,":[122],"suite":[124],"fitness":[127],"landscape":[128],"analysis":[129,149,180],"measures":[130],"adopted.The":[132],"experiments":[133],"evaluating":[135],"proposed":[137],"operated":[140],"6":[142],"algorithms":[143,157,185],"across":[144],"65":[145],"instances.The":[147],"resulting":[148],"showed":[150],"successfully":[155],"specify":[156],"in":[158],"per-instance":[160],"basis":[161],"PSP,":[163],"even":[164],"sequence":[167],"features.In":[168],"relation":[169],"that,":[171],"characteristics":[173],"affecting":[174],"algorithms'":[176],"reported.This":[179],"show":[182],"why":[183],"certain":[184],"struggle":[186],"solve":[188],"specific":[189],"instances":[190],"while":[191],"they":[192],"doing":[194],"great":[195],"some":[197],"others.":[198]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}