{"id":"https://openalex.org/W4412877240","doi":"https://doi.org/10.1145/3711896.3736876","title":"CellCLAT: Preserving Topology and Trimming Redundancy in Self-Supervised Cellular Contrastive Learning","display_name":"CellCLAT: Preserving Topology and Trimming Redundancy in Self-Supervised Cellular Contrastive Learning","publication_year":2025,"publication_date":"2025-08-03","ids":{"openalex":"https://openalex.org/W4412877240","doi":"https://doi.org/10.1145/3711896.3736876"},"language":"en","primary_location":{"id":"doi:10.1145/3711896.3736876","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3711896.3736876","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3711896.3736876","source":null,"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining V.2","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3711896.3736876","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Bin Qin","orcid":"https://orcid.org/0009-0001-9023-0293"},"institutions":[{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Qin","raw_affiliation_strings":["Institute of Software, Chinese Academy of Sciences, Beijing, China and University of Chinese Academy of Sciences, Beijing, China"],"raw_orcid":"https://orcid.org/0009-0001-9023-0293","affiliations":[{"raw_affiliation_string":"Institute of Software, Chinese Academy of Sciences, Beijing, China and University of Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113076182","display_name":"Qirui Ji","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qirui Ji","raw_affiliation_strings":["Institute of Software, Chinese Academy of Sciences, Beijing, China and University of Chinese Academy of Sciences, Beijing, China"],"raw_orcid":"https://orcid.org/0009-0006-5982-9739","affiliations":[{"raw_affiliation_string":"Institute of Software, Chinese Academy of Sciences, Beijing, China and University of Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062990010","display_name":"Jiangmeng Li","orcid":"https://orcid.org/0000-0002-3376-1522"},"institutions":[{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiangmeng Li","raw_affiliation_strings":["Institute of Software, Chinese Academy of Sciences, Beijing, China and University of Chinese Academy of Sciences, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-3376-1522","affiliations":[{"raw_affiliation_string":"Institute of Software, Chinese Academy of Sciences, Beijing, China and University of Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yupeng Wang","orcid":"https://orcid.org/0009-0008-3462-0335"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yupeng Wang","raw_affiliation_strings":["Institute of Software, Chinese Academy of Sciences, Beijing, China"],"raw_orcid":"https://orcid.org/0009-0008-3462-0335","affiliations":[{"raw_affiliation_string":"Institute of Software, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Xuesong Wu","orcid":"https://orcid.org/0000-0002-9534-6906"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuesong Wu","raw_affiliation_strings":["Institute of Software, Chinese Academy of Sciences, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-9534-6906","affiliations":[{"raw_affiliation_string":"Institute of Software, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102852762","display_name":"Jianwen Cao","orcid":"https://orcid.org/0000-0003-4329-3790"},"institutions":[{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianwen Cao","raw_affiliation_strings":["Institute of Software, Chinese Academy of Sciences, Beijing, China and University of Chinese Academy of Sciences, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0003-4329-3790","affiliations":[{"raw_affiliation_string":"Institute of Software, Chinese Academy of Sciences, Beijing, China and University of Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4210165038"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5115602852","display_name":"Fanjiang Xu","orcid":"https://orcid.org/0000-0002-4981-6217"},"institutions":[{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fanjiang Xu","raw_affiliation_strings":["Institute of Software, Chinese Academy of Sciences, Beijing, China and University of Chinese Academy of Sciences, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-4981-6217","affiliations":[{"raw_affiliation_string":"Institute of Software, Chinese Academy of Sciences, Beijing, China and University of Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4210165038"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"2338","last_page":"2349"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11307","display_name":"Domain Adaptation and Few-Shot Learning","score":0.9679999947547913,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12072","display_name":"Machine Learning and Algorithms","score":0.9453999996185303,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trimming","display_name":"Trimming","score":0.8900850415229797},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.7496743202209473},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6426469087600708},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.5984098315238953},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4383181631565094},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3282850384712219},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22963592410087585},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.10648044943809509}],"concepts":[{"id":"https://openalex.org/C56951928","wikidata":"https://www.wikidata.org/wiki/Q3539213","display_name":"Trimming","level":2,"score":0.8900850415229797},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.7496743202209473},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6426469087600708},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.5984098315238953},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4383181631565094},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3282850384712219},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22963592410087585},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.10648044943809509},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3711896.3736876","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3711896.3736876","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3711896.3736876","source":null,"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining V.2","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3711896.3736876","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3711896.3736876","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3711896.3736876","source":null,"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining V.2","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1913083756","display_name":null,"funder_award_id":"Grant No. 2024M753356","funder_id":"https://openalex.org/F4320323817","funder_display_name":"Universitas Brawijaya"},{"id":"https://openalex.org/G5527818955","display_name":null,"funder_award_id":"Grant No. 62406313","funder_id":"https://openalex.org/F4320323817","funder_display_name":"Universitas Brawijaya"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320323817","display_name":"Universitas Brawijaya","ror":"https://ror.org/01wk3d929"},{"id":"https://openalex.org/F4320323970","display_name":"Ministry of Industry and Information Technology of the People's Republic of China","ror":"https://ror.org/0385nmy68"},{"id":"https://openalex.org/F4320335644","display_name":"Institute of Software, Chinese Academy of Sciences","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412877240.pdf","grobid_xml":"https://content.openalex.org/works/W4412877240.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W99871796","https://openalex.org/W1990315216","https://openalex.org/W2049875683","https://openalex.org/W2486285194","https://openalex.org/W2798991696","https://openalex.org/W2808162662","https://openalex.org/W2808803559","https://openalex.org/W2908670560","https://openalex.org/W2914721378","https://openalex.org/W2962756421","https://openalex.org/W2970791029","https://openalex.org/W2990138404","https://openalex.org/W3105346780","https://openalex.org/W3168406300","https://openalex.org/W3202514878","https://openalex.org/W4221023051","https://openalex.org/W4255383393","https://openalex.org/W4287121295","https://openalex.org/W4295934496","https://openalex.org/W4385477984","https://openalex.org/W4387623751","https://openalex.org/W4393159841","https://openalex.org/W4393160201","https://openalex.org/W6604662147"],"related_works":["https://openalex.org/W2467235537","https://openalex.org/W4243755427","https://openalex.org/W1493074871","https://openalex.org/W2222099502","https://openalex.org/W2128287377","https://openalex.org/W1979067309","https://openalex.org/W2375590729","https://openalex.org/W2385024427","https://openalex.org/W2978797270","https://openalex.org/W1972676838"],"abstract_inverted_index":{"Self-supervised":[0],"topological":[1,92,182],"deep":[2],"learning":[3,45,207],"(TDL)":[4],"represents":[5],"a":[6,115,135,161,175,210],"nascent":[7],"but":[8],"underexplored":[9],"area":[10],"with":[11,111],"significant":[12,211],"potential":[13],"for":[14,46],"modeling":[15],"higher-order":[16,84,187],"interactions":[17,146],"in":[18,43,67,94,213],"simplicial":[19,32],"complexes":[20,23,35,96,127],"and":[21,63,193],"cellular":[22,34,47,61,68,85,95,126,145,151,155,162],"to":[24,31,60,119,121,167,196],"derive":[25],"representations":[26],"of":[27,83,125],"unlabeled":[28],"graphs.":[29],"Compared":[30],"complexes,":[33,62],"exhibit":[36],"greater":[37],"expressive":[38],"power.":[39],"However,":[40],"the":[41,81,88,122,149],"advancement":[42],"self-supervised":[44,205],"TDL":[48],"is":[49,165],"largely":[50],"hindered":[51],"by":[52],"two":[53],"core":[54],"challenges:":[55],"extrinsic":[56],"structural":[57],"constraints":[58,124],"inherent":[59],"intrinsic":[64],"semantic":[65],"redundancy":[66,93],"representations.":[69],"The":[70],"first":[71],"challenge":[72],"highlights":[73],"that":[74,91,140,198],"traditional":[75],"graph":[76,206],"augmentation":[77,138],"techniques":[78],"may":[79],"compromise":[80],"integrity":[82],"interactions,":[86],"while":[87,128,184],"second":[89],"underscores":[90],"potentially":[97],"diminish":[98],"task-relevant":[99],"information.":[100],"To":[101],"address":[102],"these":[103],"issues,":[104],"we":[105,133],"introduce":[106],"Cellular":[107],"Complex":[108],"Contrastive":[109],"Learning":[110],"Adaptive":[112],"Trimming":[113],"(CellCLAT),":[114],"twofold":[116],"framework":[117],"designed":[118],"adhere":[120],"combinatorial":[123],"mitigating":[129],"informational":[130],"redundancy.":[131],"Specifically,":[132],"propose":[134],"parameter":[136],"perturbation-based":[137],"method":[139],"injects":[141],"controlled":[142],"noise":[143],"into":[144],"without":[147],"altering":[148],"underlying":[150],"structures,":[152],"thereby":[153],"preserving":[154],"topology":[156],"during":[157],"contrastive":[158],"learning.":[159],"Additionally,":[160],"trimming":[163],"scheduler":[164],"employed":[166],"mask":[168],"gradient":[169],"contributions":[170],"from":[171],"task-irrelevant":[172],"cells":[173],"through":[174],"bi-level":[176],"meta-learning":[177],"approach,":[178],"effectively":[179],"removing":[180],"redundant":[181],"elements":[183],"maintaining":[185],"critical":[186],"semantics.":[188],"We":[189],"provide":[190],"theoretical":[191],"justification":[192],"empirical":[194],"validation":[195],"demonstrate":[197],"CellCLAT":[199],"achieves":[200],"substantial":[201],"improvements":[202],"over":[203],"existing":[204],"methods,":[208],"marking":[209],"attempt":[212],"this":[214],"domain.":[215]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
