{"id":"https://openalex.org/W4412875459","doi":"https://doi.org/10.1145/3711896.3736556","title":"A Survey on Unifying Large Language Models and Knowledge Graphs for Biomedicine and Healthcare","display_name":"A Survey on Unifying Large Language Models and Knowledge Graphs for Biomedicine and Healthcare","publication_year":2025,"publication_date":"2025-08-03","ids":{"openalex":"https://openalex.org/W4412875459","doi":"https://doi.org/10.1145/3711896.3736556","pmid":"https://pubmed.ncbi.nlm.nih.gov/41858611"},"language":"en","primary_location":{"id":"doi:10.1145/3711896.3736556","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3711896.3736556","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3711896.3736556","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining V.2","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3711896.3736556","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016158477","display_name":"Ran Xu","orcid":"https://orcid.org/0000-0002-2189-0386"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ran Xu","raw_affiliation_strings":["Department of Computer Science, Emory University, Atlanta, USA"],"raw_orcid":"https://orcid.org/0000-0002-2189-0386","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Emory University, Atlanta, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044385217","display_name":"Patrick Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I183874917","display_name":"Urbana University","ror":"https://ror.org/04kp3hw27","country_code":"US","type":"education","lineage":["https://openalex.org/I183874917"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick Jiang","raw_affiliation_strings":["Department of Computer Science, UIUC, Urbana, IL, USA"],"raw_orcid":"https://orcid.org/0000-0001-9925-3777","affiliations":[{"raw_affiliation_string":"Department of Computer Science, UIUC, Urbana, IL, USA","institution_ids":["https://openalex.org/I183874917"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007704896","display_name":"Linhao Luo","orcid":"https://orcid.org/0000-0003-0027-942X"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Linhao Luo","raw_affiliation_strings":["Department of Computer Science, Monash University, Melbourne, Australia"],"raw_orcid":"https://orcid.org/0000-0003-0027-942X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Monash University, Melbourne, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100645991","display_name":"Cao Xiao","orcid":"https://orcid.org/0000-0002-3869-6942"},"institutions":[{"id":"https://openalex.org/I189448455","display_name":"General Electric (Spain)","ror":"https://ror.org/04gbh9b75","country_code":"ES","type":"company","lineage":["https://openalex.org/I1332737386","https://openalex.org/I189448455"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Cao Xiao","raw_affiliation_strings":["GE HealthCare, Seattle, USA"],"raw_orcid":"https://orcid.org/0000-0002-3869-6942","affiliations":[{"raw_affiliation_string":"GE HealthCare, Seattle, USA","institution_ids":["https://openalex.org/I189448455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054282565","display_name":"Adam Cross","orcid":"https://orcid.org/0000-0001-5866-5943"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4210098396","display_name":"Indo-American Center","ror":"https://ror.org/00yw8fx90","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210098396"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Cross","raw_affiliation_strings":["Department of Pediatrics, UIC, Chicago, IL, USA"],"raw_orcid":"https://orcid.org/0000-0001-5866-5943","affiliations":[{"raw_affiliation_string":"Department of Pediatrics, UIC, Chicago, IL, USA","institution_ids":["https://openalex.org/I4210098396","https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008056593","display_name":"Shirui Pan","orcid":"https://orcid.org/0000-0003-0794-527X"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Shirui Pan","raw_affiliation_strings":["School of ICT, Griffith University, Brisbane, Australia"],"raw_orcid":"https://orcid.org/0000-0003-0794-527X","affiliations":[{"raw_affiliation_string":"School of ICT, Griffith University, Brisbane, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084279065","display_name":"Jimeng Sun","orcid":"https://orcid.org/0000-0003-1512-6426"},"institutions":[{"id":"https://openalex.org/I183874917","display_name":"Urbana University","ror":"https://ror.org/04kp3hw27","country_code":"US","type":"education","lineage":["https://openalex.org/I183874917"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jimeng Sun","raw_affiliation_strings":["Department of Computer Science, UIUC, Urbana, IL, USA"],"raw_orcid":"https://orcid.org/0000-0003-1512-6426","affiliations":[{"raw_affiliation_string":"Department of Computer Science, UIUC, Urbana, IL, USA","institution_ids":["https://openalex.org/I183874917"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006897094","display_name":"Carl Yang","orcid":"https://orcid.org/0000-0001-9145-4531"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carl Yang","raw_affiliation_strings":["Department of Computer Science, Emory University, Atlanta, USA"],"raw_orcid":"https://orcid.org/0000-0001-9145-4531","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Emory University, Atlanta, USA","institution_ids":["https://openalex.org/I150468666"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5016158477"],"corresponding_institution_ids":["https://openalex.org/I150468666"],"apc_list":null,"apc_paid":null,"fwci":11.102,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.98123755,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"2025","issue":null,"first_page":"6195","last_page":"6205"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.9020096063613892},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.6317429542541504},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5838384032249451},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.4297619163990021},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4226747453212738},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.33958718180656433},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30627310276031494},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.09095531702041626}],"concepts":[{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.9020096063613892},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.6317429542541504},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5838384032249451},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.4297619163990021},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4226747453212738},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.33958718180656433},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30627310276031494},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.09095531702041626},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3711896.3736556","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3711896.3736556","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3711896.3736556","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining V.2","raw_type":"proceedings-article"},{"id":"pmid:41858611","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41858611","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"KDD : proceedings. International Conference on Knowledge Discovery & Data Mining","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12995553","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12995553/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12995553/pdf/nihms-2152947.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"KDD","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1145/3711896.3736556","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3711896.3736556","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3711896.3736556","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining V.2","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.47999998927116394}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412875459.pdf","grobid_xml":"https://content.openalex.org/works/W4412875459.grobid-xml"},"referenced_works_count":85,"referenced_works":["https://openalex.org/W2277195237","https://openalex.org/W2337480916","https://openalex.org/W2557074642","https://openalex.org/W2561529111","https://openalex.org/W2615497679","https://openalex.org/W2930957955","https://openalex.org/W2939519112","https://openalex.org/W2970476646","https://openalex.org/W2999524812","https://openalex.org/W3010336026","https://openalex.org/W3027879771","https://openalex.org/W3031933442","https://openalex.org/W3035773418","https://openalex.org/W3156260318","https://openalex.org/W3167292670","https://openalex.org/W3181518724","https://openalex.org/W3198322284","https://openalex.org/W3211201308","https://openalex.org/W3211454967","https://openalex.org/W3217681006","https://openalex.org/W4212889679","https://openalex.org/W4221143046","https://openalex.org/W4225632115","https://openalex.org/W4283391017","https://openalex.org/W4295951577","https://openalex.org/W4304195432","https://openalex.org/W4308159032","https://openalex.org/W4309674289","https://openalex.org/W4309953112","https://openalex.org/W4310744116","https://openalex.org/W4312220150","https://openalex.org/W4317542727","https://openalex.org/W4328107868","https://openalex.org/W4365597191","https://openalex.org/W4377864750","https://openalex.org/W4378528423","https://openalex.org/W4378942305","https://openalex.org/W4381679608","https://openalex.org/W4382140804","https://openalex.org/W4383994582","https://openalex.org/W4384071683","https://openalex.org/W4385381606","https://openalex.org/W4385570744","https://openalex.org/W4385571693","https://openalex.org/W4385574107","https://openalex.org/W4385848430","https://openalex.org/W4386275705","https://openalex.org/W4387322659","https://openalex.org/W4388092845","https://openalex.org/W4388467895","https://openalex.org/W4389523715","https://openalex.org/W4389523903","https://openalex.org/W4390873086","https://openalex.org/W4390874280","https://openalex.org/W4391407054","https://openalex.org/W4391681328","https://openalex.org/W4393248242","https://openalex.org/W4393867901","https://openalex.org/W4394571637","https://openalex.org/W4394591548","https://openalex.org/W4396913708","https://openalex.org/W4399115601","https://openalex.org/W4400262563","https://openalex.org/W4401857346","https://openalex.org/W4402567773","https://openalex.org/W4402669773","https://openalex.org/W4402670680","https://openalex.org/W4402671243","https://openalex.org/W4402671488","https://openalex.org/W4402827768","https://openalex.org/W4403322754","https://openalex.org/W4403577427","https://openalex.org/W4403791927","https://openalex.org/W4404048128","https://openalex.org/W4404486407","https://openalex.org/W4404781813","https://openalex.org/W4404782130","https://openalex.org/W4404782603","https://openalex.org/W4406460380","https://openalex.org/W4407308601","https://openalex.org/W4409346762","https://openalex.org/W6607437068","https://openalex.org/W6846633355","https://openalex.org/W6872286886","https://openalex.org/W6877026937"],"related_works":["https://openalex.org/W2017899917","https://openalex.org/W2080571363","https://openalex.org/W2481322495","https://openalex.org/W2898682754","https://openalex.org/W2889841093","https://openalex.org/W2151082141","https://openalex.org/W2365236913","https://openalex.org/W3194374240","https://openalex.org/W2993861175","https://openalex.org/W4402987654"],"abstract_inverted_index":{"In":[0],"recent":[1,87],"years,":[2],"the":[3,15,74,90,100,117,122],"landscape":[4],"of":[5,79,93,164],"digital":[6],"biomedicine":[7,118],"and":[8,23,54,57,77,105,119,129,142,144,152,160,179],"healthcare":[9,120],"has":[10,110],"been":[11,46],"reshaped":[12],"due":[13],"to":[14,37,102,113],"disruptive":[16],"breakthroughs":[17],"in":[18,49,68,116],"AIfacilitated":[19],"by":[20],"tremendous":[21],"data":[22,36,126,175],"high-performance":[24],"computers,":[25],"large":[26],"language":[27],"models":[28],"(LLMs)":[29],"have":[30,45,155],"transformed":[31],"information":[32],"technology":[33],"from":[34,66,133],"accessing":[35],"performing":[38],"analytical":[39,80],"tasks.While":[40],"demonstrating":[41],"unprecedented":[42],"capabilities,":[43],"LLMs":[44,98],"found":[47],"unreliable":[48],"tasks":[50],"requiring":[51],"factual":[52],"knowledge":[53,109,138],"rigorous":[55],"reasoning.Biomedicine":[56],"healthcare,":[58],"as":[59],"an":[60],"important":[61],"vertical":[62],"domain":[63],"rapidly":[64],"benefitting":[65],"progress":[67],"AI,":[69],"necessitates":[70],"strict":[71],"requirements":[72],"on":[73,96],"accuracy,":[75],"controllability,":[76],"interpretability":[78],"models,":[81],"posing":[82],"critical":[83],"challenges":[84],"for":[85],"LLMs.Despite":[86],"studies":[88],"addressing":[89],"hallucination":[91],"problem":[92],"LLMs,":[94],"research":[95],"empowering":[97],"with":[99,107,173],"ability":[101],"plan,":[103],"reason,":[104],"ground":[106],"explicit":[108],"also":[111],"started":[112],"prosper,":[114],"especially":[115],"domain.On":[121],"other":[123],"hand,":[124],"biomedical":[125,137],"are":[127,167],"enormous":[128],"notoriously":[130],"complex,":[131],"coming":[132],"various":[134,146,162,171],"sources":[135],"(e.g.,":[136,148],"bases,":[139],"online":[140],"literature,":[141],"hospitals)":[143],"bearing":[145],"modalities":[147],"tables,":[149],"texts,":[150],"images":[151],"time-series).Healthcare":[153],"professionals":[154],"spent":[156],"decades":[157],"collecting,":[158],"cleaning,":[159],"curating":[161],"types":[163],"data.The":[165],"processes":[166],"extremely":[168],"costly,":[169],"producing":[170],"datasets":[172],"different":[174],"schemas,":[176],"coding":[177],"systems,":[178],"quality":[180],"standards,":[181],"many":[182],"privately":[183]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4}],"updated_date":"2026-05-29T09:21:14.243279","created_date":"2025-10-10T00:00:00"}
