{"id":"https://openalex.org/W4405191554","doi":"https://doi.org/10.1145/3707650","title":"Towards Improving the Efficiency of Drug Repurposing by Leveraging Node Promiscuity in Biomedical Knowledge Graphs","display_name":"Towards Improving the Efficiency of Drug Repurposing by Leveraging Node Promiscuity in Biomedical Knowledge Graphs","publication_year":2024,"publication_date":"2024-12-09","ids":{"openalex":"https://openalex.org/W4405191554","doi":"https://doi.org/10.1145/3707650"},"language":"en","primary_location":{"id":"doi:10.1145/3707650","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3707650","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3707650","source":{"id":"https://openalex.org/S4210174653","display_name":"ACM Transactions on Computing for Healthcare","issn_l":"2637-8051","issn":["2637-8051","2691-1957"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Computing for Healthcare","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3707650","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001438691","display_name":"Daniel Korn","orcid":"https://orcid.org/0000-0002-1780-9872"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniel Korn","raw_affiliation_strings":["Department of Computer Science, The University of North Carolina at Chapel Hill College of Arts and Sciences, Chapel Hill, North Carolina, USA","University of North Carolina at Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of North Carolina at Chapel Hill College of Arts and Sciences, Chapel Hill, North Carolina, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115064219","display_name":"Pei-Yu Hou","orcid":"https://orcid.org/0000-0001-5429-476X"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pei-Yu Hou","raw_affiliation_strings":["Department of Industrial and Systems Engineering, North Carolina State University, Raleigh, North Carolina, USA","North Carolina State University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Industrial and Systems Engineering, North Carolina State University, Raleigh, North Carolina, USA","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"North Carolina State University, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045531668","display_name":"Kara Schatz","orcid":"https://orcid.org/0000-0003-2310-5131"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]},{"id":"https://openalex.org/I194120229","display_name":"Xavier University","ror":"https://ror.org/00f266q65","country_code":"US","type":"education","lineage":["https://openalex.org/I194120229"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kara Schatz","raw_affiliation_strings":["Department of Computer Science, North Carolina State University, Raleigh, North Carolina, USA and Computer Science Department, Xavier University, Cincinnati, Ohio, USA","North Carolina State University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, North Carolina State University, Raleigh, North Carolina, USA and Computer Science Department, Xavier University, Cincinnati, Ohio, USA","institution_ids":["https://openalex.org/I137902535","https://openalex.org/I194120229"]},{"raw_affiliation_string":"North Carolina State University, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069406546","display_name":"Jon-Michael Beasley","orcid":"https://orcid.org/0000-0002-2957-8792"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jon-Michael Beasley","raw_affiliation_strings":["Eshelman School of Pharmacy, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA","University of North Carolina at Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"Eshelman School of Pharmacy, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078536199","display_name":"Alexander Tropsha","orcid":"https://orcid.org/0000-0003-3802-8896"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Tropsha","raw_affiliation_strings":["Eshelman School of Pharmacy, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA","University of North Carolina at Chapel Hill, USA"],"affiliations":[{"raw_affiliation_string":"Eshelman School of Pharmacy, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078910758","display_name":"Rada Chirkova","orcid":"https://orcid.org/0000-0003-4249-9690"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rada Chirkova","raw_affiliation_strings":["Department of Computer Science, North Carolina State University, Raleigh, North Carolina, USA","North Carolina State University, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, North Carolina State University, Raleigh, North Carolina, USA","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"North Carolina State University, USA","institution_ids":["https://openalex.org/I137902535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5001438691"],"corresponding_institution_ids":["https://openalex.org/I114027177"],"apc_list":null,"apc_paid":null,"fwci":0.2339,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.59750365,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"6","issue":"1","first_page":"1","last_page":"32"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/promiscuity","display_name":"Promiscuity","score":0.799686849117279},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.7280689477920532},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.6502234935760498},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5574731230735779},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5311751961708069},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.48495912551879883},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.43378517031669617},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.23957669734954834},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2271885871887207},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20712950825691223},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.16207143664360046},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13130593299865723}],"concepts":[{"id":"https://openalex.org/C2779618474","wikidata":"https://www.wikidata.org/wiki/Q261290","display_name":"Promiscuity","level":2,"score":0.799686849117279},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.7280689477920532},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.6502234935760498},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5574731230735779},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5311751961708069},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.48495912551879883},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.43378517031669617},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.23957669734954834},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2271885871887207},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20712950825691223},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.16207143664360046},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13130593299865723},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3707650","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3707650","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3707650","source":{"id":"https://openalex.org/S4210174653","display_name":"ACM Transactions on Computing for Healthcare","issn_l":"2637-8051","issn":["2637-8051","2691-1957"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Computing for Healthcare","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1145/3707650","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3707650","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3707650","source":{"id":"https://openalex.org/S4210174653","display_name":"ACM Transactions on Computing for Healthcare","issn_l":"2637-8051","issn":["2637-8051","2691-1957"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319798","host_organization_name":"Association for Computing Machinery","host_organization_lineage":["https://openalex.org/P4310319798"],"host_organization_lineage_names":["Association for Computing Machinery"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM Transactions on Computing for Healthcare","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6100000143051147,"display_name":"Decent work and economic growth","id":"https://metadata.un.org/sdg/8"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4405191554.pdf"},"referenced_works_count":95,"referenced_works":["https://openalex.org/W114118985","https://openalex.org/W175897666","https://openalex.org/W190540197","https://openalex.org/W792254668","https://openalex.org/W1507922517","https://openalex.org/W1930624869","https://openalex.org/W1967082026","https://openalex.org/W1968682237","https://openalex.org/W1975743268","https://openalex.org/W1983404333","https://openalex.org/W1984031712","https://openalex.org/W1987730034","https://openalex.org/W2008620264","https://openalex.org/W2009313526","https://openalex.org/W2011726136","https://openalex.org/W2011913908","https://openalex.org/W2013759889","https://openalex.org/W2030035054","https://openalex.org/W2042711932","https://openalex.org/W2050149896","https://openalex.org/W2051286763","https://openalex.org/W2058982362","https://openalex.org/W2070184017","https://openalex.org/W2071075398","https://openalex.org/W2072152755","https://openalex.org/W2076516150","https://openalex.org/W2100710204","https://openalex.org/W2101234009","https://openalex.org/W2109985618","https://openalex.org/W2113954569","https://openalex.org/W2115280476","https://openalex.org/W2118382442","https://openalex.org/W2140825896","https://openalex.org/W2142603938","https://openalex.org/W2164768341","https://openalex.org/W2187089797","https://openalex.org/W2300469216","https://openalex.org/W2339011122","https://openalex.org/W2339329611","https://openalex.org/W2539985226","https://openalex.org/W2558366645","https://openalex.org/W2573312253","https://openalex.org/W2604272474","https://openalex.org/W2604527271","https://openalex.org/W2612872092","https://openalex.org/W2614875212","https://openalex.org/W2741310710","https://openalex.org/W2759136286","https://openalex.org/W2781993106","https://openalex.org/W2885673101","https://openalex.org/W2896002881","https://openalex.org/W2911489562","https://openalex.org/W2912717193","https://openalex.org/W2949311246","https://openalex.org/W2951512731","https://openalex.org/W2961798429","https://openalex.org/W2962756421","https://openalex.org/W2963224980","https://openalex.org/W2964092925","https://openalex.org/W2968353232","https://openalex.org/W2990374909","https://openalex.org/W2998922495","https://openalex.org/W3039465695","https://openalex.org/W3040223991","https://openalex.org/W3040619593","https://openalex.org/W3043498388","https://openalex.org/W3080456792","https://openalex.org/W3082246640","https://openalex.org/W3087156149","https://openalex.org/W3093150592","https://openalex.org/W3113293777","https://openalex.org/W3121095945","https://openalex.org/W3156308640","https://openalex.org/W3164758947","https://openalex.org/W3174998205","https://openalex.org/W3176163250","https://openalex.org/W3205562080","https://openalex.org/W3210989246","https://openalex.org/W4211123915","https://openalex.org/W4211141680","https://openalex.org/W4212931201","https://openalex.org/W4235019172","https://openalex.org/W4238407524","https://openalex.org/W4240935049","https://openalex.org/W4244781806","https://openalex.org/W4249349846","https://openalex.org/W4282593722","https://openalex.org/W4291012579","https://openalex.org/W4299943797","https://openalex.org/W4368339293","https://openalex.org/W4376608267","https://openalex.org/W4386020026","https://openalex.org/W4386802074","https://openalex.org/W6675354045","https://openalex.org/W6844372054"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4396858017","https://openalex.org/W4400165188","https://openalex.org/W4206422705","https://openalex.org/W4320009247","https://openalex.org/W3186872001"],"abstract_inverted_index":{"To":[0,149],"accelerate":[1],"the":[2,25,36,40,58,82,89,102,123,130,140,151,167,170],"time-":[3],"and":[4,10,24,57,160,165,188],"labor-intensive":[5],"processes":[6],"of":[7,80,104,122,132,189],"drug":[8,147,195],"discovery":[9],"repurposing,":[11],"it":[12,127],"is":[13,101],"increasingly":[14],"common":[15],"to":[16,50,71,87,95,191],"mine":[17],"knowledge":[18,64,163],"sources":[19],"for":[20,77,158],"connections":[21,54,67],"between":[22,55],"diseases":[23,61],"drugs":[26,56,83],"that":[27,46,93,108,115,178,180],"can":[28,47,84],"treat":[29,88],"them.":[30],"In":[31],"this":[32,99],"article":[33],"we":[34,154],"address":[35,150],"scalability":[37],"challenge":[38,92],"in":[39,62,98,146,162,169,194],"connection":[41],"mining,":[42],"by":[43],"introducing":[44],"algorithms":[45,143],"be":[48,85,96,118,186],"used":[49],"find":[51],"plausible":[52],"mechanistic":[53],"potentially":[59],"associated":[60,111],"biomedical":[63,72,192],"graphs.":[65],"These":[66],"are":[68],"then":[69],"presented":[70],"experts":[73,193],"as":[74],"candidate":[75],"hypotheses":[76],"further":[78],"studies":[79],"whether":[81],"repurposed":[86],"diseases.":[90],"One":[91],"has":[94],"addressed":[97],"effort":[100],"processing":[103],"promiscuous":[105,135],"knowledge-graph":[106],"nodes,":[107],"is,":[109],"nodes":[110,137,159],"with":[112,182],"numerous":[113],"relationships":[114,133],"may":[116,138],"not":[117],"unique":[119],"or":[120],"indicative":[121],"node":[124],"properties.":[125],"As":[126],"turns":[128],"out,":[129],"multiplicity":[131],"involving":[134],"graph":[136],"prevent":[139],"aforementioned":[141],"path-finding":[142,172],"from":[144],"aiding":[145],"repurposing.":[148,196],"promiscuous-node":[152],"challenge,":[153],"introduce":[155],"promiscuity":[156],"scores":[157,168,184],"paths":[161,181],"graphs,":[164],"incorporate":[166],"proposed":[171],"algorithms.":[173],"We":[174],"report":[175],"experimental":[176],"results":[177],"indicate":[179],"low-promiscuity":[183],"could":[185],"meaningful":[187],"interest":[190]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
