{"id":"https://openalex.org/W4406328244","doi":"https://doi.org/10.1145/3706890.3706957","title":"Construction and Bioinformatics Analysis of the miRNA-mRNA Regulatory Network in Knee Osteoarthritis","display_name":"Construction and Bioinformatics Analysis of the miRNA-mRNA Regulatory Network in Knee Osteoarthritis","publication_year":2024,"publication_date":"2024-08-13","ids":{"openalex":"https://openalex.org/W4406328244","doi":"https://doi.org/10.1145/3706890.3706957"},"language":"en","primary_location":{"id":"doi:10.1145/3706890.3706957","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3706890.3706957","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2024 5th International Symposium on Artificial Intelligence for Medicine Science","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033673527","display_name":"Zhanhui Duan","orcid":null},"institutions":[{"id":"https://openalex.org/I134738993","display_name":"Shandong University of Traditional Chinese Medicine","ror":"https://ror.org/0523y5c19","country_code":"CN","type":"education","lineage":["https://openalex.org/I134738993"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhanhui Duan","raw_affiliation_strings":["Institute of Chinese Medical Literature and Culture, Shandong University of Traditional Chinese Medicine, Jinan, Shandong, China"],"raw_orcid":"https://orcid.org/0009-0002-2811-8011","affiliations":[{"raw_affiliation_string":"Institute of Chinese Medical Literature and Culture, Shandong University of Traditional Chinese Medicine, Jinan, Shandong, China","institution_ids":["https://openalex.org/I134738993"]}]},{"author_position":"last","author":{"id":null,"display_name":"Xiaobin Zhang","orcid":"https://orcid.org/0000-0002-1494-9861"},"institutions":[{"id":"https://openalex.org/I134738993","display_name":"Shandong University of Traditional Chinese Medicine","ror":"https://ror.org/0523y5c19","country_code":"CN","type":"education","lineage":["https://openalex.org/I134738993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaobin Zhang","raw_affiliation_strings":["Shandong University of Traditional Chinese Medicine, Jinan, Shandong, China"],"raw_orcid":"https://orcid.org/0000-0002-1494-9861","affiliations":[{"raw_affiliation_string":"Shandong University of Traditional Chinese Medicine, Jinan, Shandong, China","institution_ids":["https://openalex.org/I134738993"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5033673527"],"corresponding_institution_ids":["https://openalex.org/I134738993"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.42350169,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"385","last_page":"393"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10105","display_name":"Osteoarthritis Treatment and Mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10105","display_name":"Osteoarthritis Treatment and Mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11503","display_name":"Cytokine Signaling Pathways and Interactions","score":0.9628999829292297,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.8566756248474121},{"id":"https://openalex.org/keywords/osteoarthritis","display_name":"Osteoarthritis","score":0.73940110206604},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.4689606726169586},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.43882817029953003},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4171043038368225},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4060926139354706},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.279573529958725},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.26797425746917725},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24138793349266052},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1120833158493042},{"id":"https://openalex.org/keywords/alternative-medicine","display_name":"Alternative medicine","score":0.06653550267219543},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.06232959032058716}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.8566756248474121},{"id":"https://openalex.org/C2776164576","wikidata":"https://www.wikidata.org/wiki/Q62736","display_name":"Osteoarthritis","level":3,"score":0.73940110206604},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.4689606726169586},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.43882817029953003},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4171043038368225},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4060926139354706},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.279573529958725},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26797425746917725},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24138793349266052},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1120833158493042},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.06653550267219543},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.06232959032058716}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3706890.3706957","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3706890.3706957","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2024 5th International Symposium on Artificial Intelligence for Medicine Science","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W2013210087","https://openalex.org/W2118725280","https://openalex.org/W2613528775","https://openalex.org/W2772182053","https://openalex.org/W2892867000","https://openalex.org/W2979176820","https://openalex.org/W2981485716","https://openalex.org/W3097428088","https://openalex.org/W3128007126","https://openalex.org/W3130473501","https://openalex.org/W3132978812","https://openalex.org/W3179964096","https://openalex.org/W3203150483","https://openalex.org/W4402949423","https://openalex.org/W7073543458"],"related_works":["https://openalex.org/W650762618","https://openalex.org/W4242815383","https://openalex.org/W2579996474","https://openalex.org/W4386590483","https://openalex.org/W2169904250","https://openalex.org/W2346491184","https://openalex.org/W4388075929","https://openalex.org/W1902427662","https://openalex.org/W2378289665","https://openalex.org/W4399492860"],"abstract_inverted_index":{"Objective:":[0],"The":[1,31,146,180],"GEO":[2,32],"database":[3,33],"was":[4,34,96,135,149,250,279,299,344,421],"utilised":[5,150],"to":[6,13,17,36,51,67,98,153,224,231,243,252,263,272,403],"investigate":[7],"the":[8,25,38,42,52,57,60,77,80,86,89,128,139,143,171,186,189,205,236,257,286,358,362,366,387,401,416],"miRNA-mRNA":[9,318,359,363,417],"regulatory":[10,129,140],"relationships":[11],"linked":[12],"knee":[14],"osteoarthritis":[15],"and":[16,46,62,92,133,217,260,333,349,365,374,394,407],"elucidate":[18],"their":[19],"potential":[20,307,402],"mechanisms":[21],"of":[22,27,41,79,88,173,188,219,235,248,289,303,316,355,389],"action":[23],"through":[24,76,185],"application":[26],"bioinformatics":[28],"methods.":[29],"Methods:":[30],"employed":[35],"extract":[37],"expression":[39],"profiles":[40],"KOA-related":[43],"miRNA":[44,132],"(GSE175961)":[45],"mRNA":[47,134],"(GSE169077).":[48],"In":[49,204,341],"comparison":[50],"samples":[53,73],"that":[54,64,106,111,211,269,282,291,305,329,336,346,380,399],"served":[55],"as":[56,159,161,193,300,378,405],"normal":[58],"control,":[59],"miRNAs":[61,110,210,290,328,393],"mRNAs":[63,240,335],"were":[65,74,107,118,178,183,212,215,222,229,241,270,292,310,321,330,337,397],"found":[66,223,230,242,251,345],"be":[68,225,232,244,253],"differently":[69,213,238,275,331],"expressed":[70,124,214,239,276,293,332],"in":[71,151,294,419],"KOA":[72,420],"discovered":[75,398],"use":[78,87,172,187],"online":[81],"analytic":[82],"program":[83,148],"GEO2R.":[84],"With":[85],"StarBase,":[90,259],"miRWalk,":[91,258],"TargetScan":[93,261],"databases,":[94],"it":[95,343],"possible":[97,167],"make":[99],"predictions":[100],"for":[101,410],"probable":[102],"downstream":[103,266,287],"target":[104,116,168,267,308],"genes":[105,117,182,198,268,309,379,396],"controlled":[108],"by":[109,120],"exhibit":[112],"differential":[113],"expression.":[114],"Candidate":[115],"identified":[119,377],"intersecting":[121],"with":[122,200,274],"differentially":[123,339],"mRNAs.":[125,277],"Using":[126],"Cytoscape,":[127],"network":[130,364,418],"between":[131,142],"designed":[136],"based":[137],"on":[138,166,357],"interaction":[141,176,368],"two":[144],"molecules.":[145],"DAVID":[147],"order":[152],"carry":[154],"out":[155,218],"GO":[156],"function":[157],"analysis":[158,165],"well":[160],"KEGG":[162],"pathway":[163],"enrichment":[164],"genes.":[169,202],"Through":[170],"STRING,":[174],"protein-protein":[175,367],"networks":[177],"formed.":[179],"hub":[181,201],"obtained":[184],"Cytoscape":[190],"plug-in":[191],"designated":[192],"CytoHubba.":[194],"GeneMANIA":[195],"predicted":[196],"co-expressed":[197],"associated":[199],"Results:":[203],"present":[206],"study,":[207],"all":[208],"1199":[209],"examined,":[216],"them,":[220],"563":[221],"upregulated":[226],"while":[227,246],"636":[228],"downregulated.":[233],"Two":[234],"three":[237],"downregulated,":[245],"one":[247],"them":[249],"upregulated.":[254],"We":[255],"applied":[256],"databases":[262],"identify":[264],"897":[265],"expected":[271],"interact":[273],"This":[278],"done":[280],"so":[281],"we":[283],"could":[284],"infer":[285],"targets":[288],"a":[295,301,314,353,382],"distinct":[296],"manner.":[297],"It":[298],"consequence":[302],"this":[304,390],"77":[306],"identified.":[311],"To":[312],"conclude,":[313],"total":[315],"76":[317],"relationship":[319],"pairs":[320],"filtered":[322],"out.":[323],"These":[324],"pairings":[325],"included":[326],"3":[327,392],"75":[334],"also":[338],"expressed.":[340],"addition,":[342],"miR-449a,":[347],"miR-1285-5p,":[348],"miR-6779-5p":[350],"have":[351,400],"quite":[352],"bit":[354],"effect":[356],"network.":[360],"Within":[361],"network,":[369],"respectively,":[370],"CHST12,":[371],"B4GALT1,":[372],"ALCAM,":[373],"FUT4":[375],"are":[376],"play":[381],"significant":[383],"role.":[384],"Conclusions:":[385],"During":[386],"course":[388],"inquiry,":[391],"4":[395],"act":[404],"biomarkers":[406],"therapeutic":[408],"goals":[409],"individuals":[411],"suffering":[412],"from":[413],"KOA.":[414],"Additionally,":[415],"constructed.":[422]},"counts_by_year":[],"updated_date":"2025-12-23T23:11:35.936235","created_date":"2025-10-10T00:00:00"}
