{"id":"https://openalex.org/W4407614614","doi":"https://doi.org/10.1145/3704198.3704199","title":"Upscaling Mouse Spinal Cord Atlas for 3D Alignment","display_name":"Upscaling Mouse Spinal Cord Atlas for 3D Alignment","publication_year":2024,"publication_date":"2024-10-18","ids":{"openalex":"https://openalex.org/W4407614614","doi":"https://doi.org/10.1145/3704198.3704199"},"language":"en","primary_location":{"id":"doi:10.1145/3704198.3704199","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3704198.3704199","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2024 13th International Conference on Bioinformatics and Biomedical Science","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Xingyue Feng","orcid":"https://orcid.org/0009-0002-4501-3799"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xingyue Feng","raw_affiliation_strings":["Northeast Normal University, Changchun, Jilin, China,"],"raw_orcid":"https://orcid.org/0009-0002-4501-3799","affiliations":[{"raw_affiliation_string":"Northeast Normal University, Changchun, Jilin, China,","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100643932","display_name":"Guangwei Zhang","orcid":"https://orcid.org/0000-0002-3228-1981"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guangwei Zhang","raw_affiliation_strings":["University of Southern California, Los Angeles, USA,"],"raw_orcid":"https://orcid.org/0000-0002-3228-1981","affiliations":[{"raw_affiliation_string":"University of Southern California, Los Angeles, USA,","institution_ids":["https://openalex.org/I1174212"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I184983240"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.27698159,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10719","display_name":"3D Shape Modeling and Analysis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10719","display_name":"3D Shape Modeling and Analysis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11984","display_name":"Anatomy and Medical Technology","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.7398018836975098},{"id":"https://openalex.org/keywords/spinal-cord","display_name":"Spinal cord","score":0.591670036315918},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5818832516670227},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.3264209032058716},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.30915284156799316},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14947840571403503}],"concepts":[{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.7398018836975098},{"id":"https://openalex.org/C2780775167","wikidata":"https://www.wikidata.org/wiki/Q9606","display_name":"Spinal cord","level":2,"score":0.591670036315918},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5818832516670227},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.3264209032058716},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.30915284156799316},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14947840571403503}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3704198.3704199","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3704198.3704199","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2024 13th International Conference on Bioinformatics and Biomedical Science","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W58642534","https://openalex.org/W78661028","https://openalex.org/W1988658915","https://openalex.org/W1992265439","https://openalex.org/W1993775751","https://openalex.org/W2006896953","https://openalex.org/W2017400430","https://openalex.org/W2037582484","https://openalex.org/W2047754178","https://openalex.org/W2070799725","https://openalex.org/W2072965828","https://openalex.org/W2083802308","https://openalex.org/W2099540110","https://openalex.org/W2156755609","https://openalex.org/W2528727157","https://openalex.org/W2592207636","https://openalex.org/W2743881826","https://openalex.org/W2905058438","https://openalex.org/W2905580355","https://openalex.org/W2947461179","https://openalex.org/W2971514011","https://openalex.org/W2985746287","https://openalex.org/W2994882463","https://openalex.org/W3021105102","https://openalex.org/W3088278555","https://openalex.org/W3097569252","https://openalex.org/W3122444501","https://openalex.org/W3126253200","https://openalex.org/W3165457844","https://openalex.org/W3199305089","https://openalex.org/W3203053031","https://openalex.org/W3211224256","https://openalex.org/W3211966629","https://openalex.org/W4285678435","https://openalex.org/W4321003667","https://openalex.org/W4381948413","https://openalex.org/W4387095485","https://openalex.org/W4388654159","https://openalex.org/W4388694060","https://openalex.org/W4389670555"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2314146950","https://openalex.org/W2011187995","https://openalex.org/W2373521488","https://openalex.org/W2324878645","https://openalex.org/W2803101231","https://openalex.org/W4284509","https://openalex.org/W2937445305"],"abstract_inverted_index":{"Atlas":[0],"plays":[1],"a":[2,53,71,75,87,109,134,148,159,181,200,233],"crucial":[3],"role":[4],"in":[5,16,21,104,133,226,243],"the":[6,24,64,84,125,154,175,189,194,237],"field":[7],"of":[8,124,239],"neuroscience.":[9],"While":[10],"brain":[11],"atlases":[12,31,242],"have":[13],"been":[14],"established":[15],"2D":[17,39,48,127,182,201,241],"and":[18,26,50,66,100,118,140,173],"3D":[19,72,76,88,110,135,162,195,212],"models":[20],"recent":[22],"years,":[23],"exploration":[25],"research":[27],"on":[28,47,121],"spinal":[29,41,78,90,112,129,164,203,213],"cord":[30,42,79,91,113,130,165,204,214],"are":[32],"significantly":[33],"lacking.":[34],"The":[35,142,223],"currently":[36],"widely":[37],"used":[38],"mouse":[40,77,89,111,128,163,202],"atlas":[43,80,92,114,136,183,196,205,215],"provides":[44],"detailed":[45],"information":[46],"sections":[49],"has":[51],"become":[52],"mature":[54],"alignment":[55],"template":[56],"for":[57,220,235],"data":[58],"analysis.":[59],"However,":[60],"this":[61,105,227],"cannot":[62],"replace":[63],"precision":[65],"visual":[67],"experience":[68],"offered":[69],"by":[70,207],"atlas.":[73,166],"Nevertheless,":[74],"remains":[81],"unavailable":[82],"to":[83],"community.":[85],"Obtaining":[86],"through":[93,171],"traditional":[94],"experimental":[95],"methods":[96],"requires":[97],"high":[98,138],"labor":[99],"time":[101],"costs.":[102],"Therefore,":[103],"study,":[106],"we":[107,157,178],"reconstructed":[108],"using":[115,147],"modeling":[116],"software":[117],"algorithms":[119],"based":[120],"region-specific":[122,143],"interpolation":[123,144],"annotated":[126],"atlas,":[131],"resulting":[132],"with":[137,184],"credibility":[139],"resolution.":[141,209],"was":[145],"achieved":[146],"bridging":[149],"loop":[150],"algorithm.":[151],"After":[152],"voxelizing":[153],"resultant":[155],"model,":[156],"obtained":[158],"high-resolution,":[160],"smoothed":[161],"By":[167],"extracting":[168],"voxel":[169],"points":[170],"code":[172],"optimizing":[174],"smooth":[176],"structures,":[177],"could":[179,229],"generate":[180],"any":[185],"arbitrary":[186],"resolution":[187,238],"along":[188],"Z-axis.":[190],"We":[191],"now":[192],"provide":[193],"as":[197,199,232],"well":[198],"enhanced":[206],"five-fold":[208],"This":[210],"new":[211],"facilitates":[216],"standardized":[217],"image":[218],"registration":[219],"cross-comparison":[221],"purposes.":[222],"method":[224],"proposed":[225],"paper":[228],"also":[230],"serve":[231],"reference":[234],"enhancing":[236],"other":[240],"specific":[244],"directions.":[245]},"counts_by_year":[],"updated_date":"2025-12-28T23:10:05.387466","created_date":"2025-10-10T00:00:00"}
