{"id":"https://openalex.org/W4405427447","doi":"https://doi.org/10.1145/3698587.3701468","title":"Leveraging Mutual Information for Functional Annotation Analysis of Microglia in Alzheimer's Disease","display_name":"Leveraging Mutual Information for Functional Annotation Analysis of Microglia in Alzheimer's Disease","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405427447","doi":"https://doi.org/10.1145/3698587.3701468"},"language":"en","primary_location":{"id":"doi:10.1145/3698587.3701468","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3698587.3701468","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100377477","display_name":"Chenyu Zhang","orcid":"https://orcid.org/0009-0003-5766-0296"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chenyu Zhang","raw_affiliation_strings":["Computer Sci. and Engr. Dept., Univ. of Connecticut, Storrs, USA"],"raw_orcid":"https://orcid.org/0009-0003-5766-0296","affiliations":[{"raw_affiliation_string":"Computer Sci. and Engr. Dept., Univ. of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031495700","display_name":"Qingli Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qingli Hu","raw_affiliation_strings":["Neuroscience Dept., UCHC, Farmington, USA"],"raw_orcid":"https://orcid.org/0009-0002-3510-5788","affiliations":[{"raw_affiliation_string":"Neuroscience Dept., UCHC, Farmington, USA","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100726968","display_name":"Honglin Wang","orcid":"https://orcid.org/0009-0004-6408-0772"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Honglin Wang","raw_affiliation_strings":["Computer Sci. and Engr. Dept., Univ. of Connecticut, Storrs, USA"],"raw_orcid":"https://orcid.org/0009-0004-6408-0772","affiliations":[{"raw_affiliation_string":"Computer Sci. and Engr. Dept., Univ. of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076114384","display_name":"Seung-Hyun Hong","orcid":"https://orcid.org/0000-0003-2848-6666"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Seung-Hyun Hong","raw_affiliation_strings":["Computer Sci. and Engr. Dept Univ. of Connecticut, Storrs, USA"],"raw_orcid":"https://orcid.org/0000-0003-2848-6666","affiliations":[{"raw_affiliation_string":"Computer Sci. and Engr. Dept Univ. of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038360689","display_name":"Riqiang Yan","orcid":"https://orcid.org/0000-0001-7195-7617"},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Riqiang Yan","raw_affiliation_strings":["Neuroscience Dept., UCHC, Farmington, USA"],"raw_orcid":"https://orcid.org/0000-0001-7195-7617","affiliations":[{"raw_affiliation_string":"Neuroscience Dept., UCHC, Farmington, USA","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112474888","display_name":"Dong\u2010Guk Shin","orcid":"https://orcid.org/0009-0004-4649-7363"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dong-Guk Shin","raw_affiliation_strings":["Computer Sci. and Engr. Dept, Univ. of Connecticut, Storrs, USA"],"raw_orcid":"https://orcid.org/0009-0004-4649-7363","affiliations":[{"raw_affiliation_string":"Computer Sci. and Engr. Dept, Univ. of Connecticut, Storrs, USA","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100377477"],"corresponding_institution_ids":["https://openalex.org/I140172145"],"apc_list":null,"apc_paid":null,"fwci":0.2353,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.58836601,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11266","display_name":"Neuroinflammation and Neurodegeneration Mechanisms","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11266","display_name":"Neuroinflammation and Neurodegeneration Mechanisms","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9778000116348267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microglia","display_name":"Microglia","score":0.6518027782440186},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6517872214317322},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5446651577949524},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5054895877838135},{"id":"https://openalex.org/keywords/alzheimers-disease","display_name":"Alzheimer's disease","score":0.45037874579429626},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44964608550071716},{"id":"https://openalex.org/keywords/mutual-information","display_name":"Mutual information","score":0.44382429122924805},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.4032067656517029},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.37466806173324585},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.28988027572631836},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.16047200560569763},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10445022583007812},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.07573086023330688}],"concepts":[{"id":"https://openalex.org/C2779830541","wikidata":"https://www.wikidata.org/wiki/Q1622829","display_name":"Microglia","level":3,"score":0.6518027782440186},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6517872214317322},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5446651577949524},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5054895877838135},{"id":"https://openalex.org/C502032728","wikidata":"https://www.wikidata.org/wiki/Q11081","display_name":"Alzheimer's disease","level":3,"score":0.45037874579429626},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44964608550071716},{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.44382429122924805},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.4032067656517029},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.37466806173324585},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.28988027572631836},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.16047200560569763},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10445022583007812},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.07573086023330688},{"id":"https://openalex.org/C2776914184","wikidata":"https://www.wikidata.org/wiki/Q101991","display_name":"Inflammation","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3698587.3701468","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3698587.3701468","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G1759019407","display_name":null,"funder_award_id":"2RF1AG025493-16","funder_id":"https://openalex.org/F4320323817","funder_display_name":"Universitas Brawijaya"}],"funders":[{"id":"https://openalex.org/F4320323817","display_name":"Universitas Brawijaya","ror":"https://ror.org/01wk3d929"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1527927437","https://openalex.org/W2061123122","https://openalex.org/W2061438946","https://openalex.org/W2082290707","https://openalex.org/W2102212449","https://openalex.org/W2120435692","https://openalex.org/W2130410032","https://openalex.org/W2514159238","https://openalex.org/W2600453489","https://openalex.org/W2624988670","https://openalex.org/W2767126550","https://openalex.org/W2794480084","https://openalex.org/W2800392236","https://openalex.org/W2804685648","https://openalex.org/W2911954305","https://openalex.org/W2991414673","https://openalex.org/W2998795963","https://openalex.org/W3000279467","https://openalex.org/W3111223540","https://openalex.org/W3204256587","https://openalex.org/W4205262634","https://openalex.org/W4206816857","https://openalex.org/W4249273120","https://openalex.org/W4283029637","https://openalex.org/W4288421439","https://openalex.org/W4289261776","https://openalex.org/W4308524646","https://openalex.org/W4313413885","https://openalex.org/W4313526657","https://openalex.org/W4318984787","https://openalex.org/W4367336636","https://openalex.org/W4387872742","https://openalex.org/W4390199273","https://openalex.org/W4390970653","https://openalex.org/W4401416008","https://openalex.org/W4402716628"],"related_works":["https://openalex.org/W2885325217","https://openalex.org/W2546440307","https://openalex.org/W3048533658","https://openalex.org/W3176323037","https://openalex.org/W2076096323","https://openalex.org/W4308968236","https://openalex.org/W2972440269","https://openalex.org/W4210834908","https://openalex.org/W3130437983","https://openalex.org/W1928993351"],"abstract_inverted_index":{"Single-cell":[0],"sequencing":[1],"technologies":[2],"have":[3],"been":[4],"advancing":[5],"rapidly,":[6],"enabling":[7],"scientists":[8,186],"to":[9,75,84,106],"identify":[10,76,123],"cell":[11,28,189],"subtypes":[12,129,164,190],"in":[13,149,187],"tissues":[14],"and":[15,117,143,169,182],"study":[16],"their":[17],"interrelationships":[18,86],"at":[19],"the":[20],"single-cell":[21,114],"level.":[22],"Current":[23],"algorithms":[24],"can":[25,122,184],"effectively":[26],"differentiate":[27],"subgroups":[29],"when":[30],"gene":[31,88],"expression":[32,89],"values":[33],"of":[34,60,91,95,127,130,179],"known":[35,97,159],"markers":[36],"vary":[37],"greatly,":[38],"yet":[39],"they":[40],"are":[41],"inadequate":[42],"for":[43],"classifying":[44],"cells":[45,131],"based":[46],"on":[47],"functionality":[48,50],"because":[49],"analysis":[51],"cannot":[52],"be":[53],"achieved":[54],"by":[55],"examining":[56],"a":[57,69,176],"handful":[58],"number":[59],"marker":[61],"genes.":[62],"To":[63],"overcome":[64],"this":[65],"limitation,":[66],"we":[67],"propose":[68],"novel":[70],"clustering":[71,104],"method":[72,80,105,121,154,174],"specifically":[73],"designed":[74],"functional":[77,125,160,192],"subtypes.":[78],"This":[79,173],"employs":[81],"mutual":[82],"information":[83],"dissect":[85],"among":[87,162],"patterns":[90],"functionally":[92],"aggregated":[93],"groups":[94],"genes,":[96],"as":[98,133],"Biological":[99],"Processes.":[100],"We":[101],"applied":[102],"our":[103,120],"12":[107],"publicly":[108],"available":[109],"Alzheimer's":[110],"Disease":[111],"(AD)":[112],"related":[113],"mRNA":[115],"datasets":[116],"evaluated":[118],"if":[119],"additional":[124],"roles":[126],"various":[128],"such":[132],"resting":[134],"microglia,":[135,137],"transitional":[136],"disease":[138],"associated":[139],"microglia":[140],"type":[141,144],"1":[142],"2---a":[145],"key":[146],"research":[147],"topics":[148],"current":[150],"AD":[151],"studies.":[152],"Our":[153],"not":[155],"only":[156],"confirms":[157],"previously":[158],"relationships":[161],"these":[163],"but":[165],"also":[166],"discovers":[167],"new":[168,177],"more":[170],"specific":[171],"ones.":[172],"offers":[175],"way":[178],"subgrouping":[180],"cells,":[181],"it":[183],"aid":[185],"labeling":[188],"with":[191],"nomenclature.":[193]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-12-19T19:40:27.379048","created_date":"2025-10-10T00:00:00"}
