{"id":"https://openalex.org/W4405427472","doi":"https://doi.org/10.1145/3698587.3701369","title":"CAPTURE: A Clustered Adaptive Patchwork Technique for Unified Registration Enhancement in Biological Imaging","display_name":"CAPTURE: A Clustered Adaptive Patchwork Technique for Unified Registration Enhancement in Biological Imaging","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405427472","doi":"https://doi.org/10.1145/3698587.3701369","pmid":"https://pubmed.ncbi.nlm.nih.gov/40454252"},"language":"en","primary_location":{"id":"doi:10.1145/3698587.3701369","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3698587.3701369","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12123223/pdf/nihms-2085499.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089811712","display_name":"Sahand Hamzehei","orcid":"https://orcid.org/0009-0002-2015-9820"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sahand Hamzehei","raw_affiliation_strings":["University of Connecticut, Computer Science &amp; Engineering, Storrs, Connecticut, USA"],"affiliations":[{"raw_affiliation_string":"University of Connecticut, Computer Science &amp; Engineering, Storrs, Connecticut, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038247014","display_name":"Gianna Raimondi","orcid":"https://orcid.org/0000-0002-2664-1362"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gianna Raimondi","raw_affiliation_strings":["University of Connecticut, Physiology &amp; Neurobiology, Storrs, Connecticut, USA"],"affiliations":[{"raw_affiliation_string":"University of Connecticut, Physiology &amp; Neurobiology, Storrs, Connecticut, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004949527","display_name":"Mostafa Karami","orcid":"https://orcid.org/0009-0009-1083-2138"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mostafa Karami","raw_affiliation_strings":["University of Connecticut, Computer Science &amp; Engineering, Storrs, Connecticut, USA"],"affiliations":[{"raw_affiliation_string":"University of Connecticut, Computer Science &amp; Engineering, Storrs, Connecticut, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008928401","display_name":"Linnaea Ostroff","orcid":"https://orcid.org/0000-0002-3348-342X"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Linnaea Ostroff","raw_affiliation_strings":["University of Connecticut, Physiology &amp; Neurobiology, Storrs, Connecticut, USA"],"affiliations":[{"raw_affiliation_string":"University of Connecticut, Physiology &amp; Neurobiology, Storrs, Connecticut, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010254642","display_name":"Sheida Nabavi","orcid":"https://orcid.org/0000-0002-5996-1020"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sheida Nabavi","raw_affiliation_strings":["University of Connecticut, Computer Science &amp; Engineering, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"University of Connecticut, Computer Science &amp; Engineering, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5089811712"],"corresponding_institution_ids":["https://openalex.org/I140172145"],"apc_list":null,"apc_paid":null,"fwci":0.2446,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.56222762,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"2024","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.5925109386444092},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5746968984603882},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5028855204582214},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.46831995248794556},{"id":"https://openalex.org/keywords/medical-imaging","display_name":"Medical imaging","score":0.43108946084976196},{"id":"https://openalex.org/keywords/biological-imaging","display_name":"Biological imaging","score":0.4164491891860962},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10361719131469727},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.09954938292503357}],"concepts":[{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.5925109386444092},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5746968984603882},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5028855204582214},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.46831995248794556},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.43108946084976196},{"id":"https://openalex.org/C2779884411","wikidata":"https://www.wikidata.org/wiki/Q4914995","display_name":"Biological imaging","level":3,"score":0.4164491891860962},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10361719131469727},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.09954938292503357},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1145/3698587.3701369","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3698587.3701369","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},{"id":"pmid:40454252","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40454252","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12123223","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12123223","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12123223/pdf/nihms-2085499.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ACM BCB","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:12123223","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12123223","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12123223/pdf/nihms-2085499.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ACM BCB","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8090483761","display_name":null,"funder_award_id":"RF1MH130472","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405427472.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W2033819227","https://openalex.org/W2041398617","https://openalex.org/W2048710758","https://openalex.org/W2063141009","https://openalex.org/W2085261163","https://openalex.org/W2117228865","https://openalex.org/W2120967246","https://openalex.org/W2124386111","https://openalex.org/W2131938193","https://openalex.org/W2133665775","https://openalex.org/W2150593711","https://openalex.org/W2166771618","https://openalex.org/W2194775991","https://openalex.org/W2976670645","https://openalex.org/W3033679780","https://openalex.org/W3114427951","https://openalex.org/W4226253448","https://openalex.org/W4237430742","https://openalex.org/W4293444968","https://openalex.org/W4319003906","https://openalex.org/W4376134693","https://openalex.org/W4387346443","https://openalex.org/W7066656558"],"related_works":["https://openalex.org/W2772917594","https://openalex.org/W2036807459","https://openalex.org/W2058170566","https://openalex.org/W2755342338","https://openalex.org/W2166024367","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2951359407","https://openalex.org/W2079911747","https://openalex.org/W1969923398"],"abstract_inverted_index":{"Image":[0],"registration":[1,27,39,123],"is":[2,10,56],"important":[3],"in":[4,109,151],"biological":[5],"image":[6,26,55,106],"analysis;":[7],"however,":[8],"it":[9,135],"often":[11],"challenged":[12],"by":[13,45,68],"distortions":[14],"and":[15,63,70,90,105,128],"non-linear":[16,65],"transformations.":[17],"In":[18],"this":[19],"paper,":[20],"we":[21],"present":[22],"a":[23,46,143],"novel":[24],"patch-wise":[25],"method":[28,35,79,115],"to":[29,40,61,121,130],"address":[30],"the":[31,113,148],"mentioned":[32],"issues.":[33],"Our":[34,99],"begins":[36],"with":[37],"global":[38],"correct":[41,64],"linear":[42,122],"transformations,":[43],"followed":[44,67],"detailed":[47],"examination":[48],"of":[49],"geometrical":[50],"distortions.":[51],"After":[52],"that,":[53],"each":[54],"adaptively":[57],"divided":[58],"into":[59],"patches":[60,72],"isolate":[62],"distortions,":[66],"reconstruction":[69],"combining":[71],"using":[73,83],"Otsu":[74],"thresholding.":[75],"We":[76,140],"evaluated":[77],"our":[78,152],"against":[80],"state-of-the-art":[81],"techniques":[82],"mutual":[84],"information":[85],"(MI),":[86],"phase":[87],"congruency-based":[88],"(PCB),":[89],"gradient-based":[91],"metrics":[92],"(GBM)":[93],"across":[94],"four":[95],"real":[96],"biology":[97],"datasets.":[98],"results":[100],"demonstrate":[101],"superior":[102],"feature":[103],"alignment":[104],"coherence,":[107],"especially":[108],"serial-stack":[110],"registrations.":[111],"While":[112],"proposed":[114],"has":[116],"longer":[117],"processing":[118],"times":[119],"compared":[120],"methods,":[124],"its":[125],"enhanced":[126],"accuracy":[127],"reliability":[129],"handle":[131],"non-uniform":[132],"distortion":[133],"makes":[134],"beneficial":[136],"for":[137],"precision-demanding":[138],"applications.":[139],"have":[141],"created":[142],"public":[144],"GitHub":[145],"repository":[146],"containing":[147],"code":[149],"used":[150],"research,":[153],"available":[154],"at":[155],"https://github.com/NabaviLab/CAPTURE.":[156]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
