{"id":"https://openalex.org/W4405427378","doi":"https://doi.org/10.1145/3698587.3701352","title":"CellCom: A web server for prediction, visualization, and evaluation of cell-cell communication mediated by ligand-receptor pairs","display_name":"CellCom: A web server for prediction, visualization, and evaluation of cell-cell communication mediated by ligand-receptor pairs","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405427378","doi":"https://doi.org/10.1145/3698587.3701352"},"language":"en","primary_location":{"id":"doi:10.1145/3698587.3701352","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3698587.3701352","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Jianing Wang","orcid":"https://orcid.org/0009-0002-6415-4829"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianing Wang","raw_affiliation_strings":["Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101078250","display_name":"Jin A","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin A","raw_affiliation_strings":["Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Hanjun Pan","orcid":"https://orcid.org/0009-0009-0080-0159"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hanjun Pan","raw_affiliation_strings":["Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044328870","display_name":"Ruiqing Zheng","orcid":"https://orcid.org/0000-0001-6372-6798"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruiqing Zheng","raw_affiliation_strings":["Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101352447","display_name":"Chaojin Wu","orcid":"https://orcid.org/0009-0009-0638-2437"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chaojin Wu","raw_affiliation_strings":["Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14706347,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.718298077583313},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.687444806098938},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4990575313568115},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.46761593222618103},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.4288095533847809},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34224796295166016},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.330761194229126},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32925522327423096},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2731642723083496},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.21493816375732422},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20791995525360107},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07195669412612915}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.718298077583313},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.687444806098938},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4990575313568115},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.46761593222618103},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.4288095533847809},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34224796295166016},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.330761194229126},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32925522327423096},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2731642723083496},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.21493816375732422},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20791995525360107},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07195669412612915}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3698587.3701352","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3698587.3701352","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5084619877","display_name":null,"funder_award_id":"62225209","funder_id":"https://openalex.org/F4320323817","funder_display_name":"Universitas Brawijaya"},{"id":"https://openalex.org/G5190532660","display_name":null,"funder_award_id":"2021RC4008","funder_id":"https://openalex.org/F4320323817","funder_display_name":"Universitas Brawijaya"}],"funders":[{"id":"https://openalex.org/F4320323817","display_name":"Universitas Brawijaya","ror":"https://ror.org/01wk3d929"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W2164578658","https://openalex.org/W2751524454","https://openalex.org/W2995024368","https://openalex.org/W2999309601","https://openalex.org/W3007935255","https://openalex.org/W3046283686","https://openalex.org/W3092318937","https://openalex.org/W3099810371","https://openalex.org/W3130232612","https://openalex.org/W3132661792","https://openalex.org/W3132829024","https://openalex.org/W3146817258","https://openalex.org/W3155546248","https://openalex.org/W3164072881","https://openalex.org/W4213066726","https://openalex.org/W4224289989","https://openalex.org/W4281716326","https://openalex.org/W4282933948","https://openalex.org/W4306404361","https://openalex.org/W4309227545","https://openalex.org/W4317757307","https://openalex.org/W4361204211","https://openalex.org/W4384283548","https://openalex.org/W4385066913","https://openalex.org/W4387728447","https://openalex.org/W4390956314","https://openalex.org/W4390974497"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2081517010","https://openalex.org/W2121496884","https://openalex.org/W2387910809","https://openalex.org/W2294221496"],"abstract_inverted_index":{"Cell-cell":[0],"communication":[1,129,143],"across":[2],"multiple":[3],"cell":[4,142,155],"types":[5],"and":[6,15,23,31,46,72,76,94,104,125,140,151,171,175,183],"tissues":[7],"strictly":[8],"governs":[9],"the":[10,28,40,70,89,108,173,180],"proper":[11],"functioning":[12],"of":[13,66,91,102,127,149,177],"metazoans":[14],"extensively":[16],"relies":[17],"on":[18],"interactions":[19],"between":[20],"secreted":[21],"ligands":[22],"cell-surface":[24],"receptors.":[25],"Understanding":[26],"how":[27],"cells":[29],"interact":[30],"communicate":[32],"with":[33],"each":[34],"other":[35],"is":[36,191],"crucial":[37],"for":[38,120,164,188],"deciphering":[39],"intricate":[41],"networks":[42],"that":[43],"govern":[44],"health":[45],"pathology,":[47],"providing":[48],"valuable":[49],"insights":[50],"into":[51],"potential":[52],"therapeutic":[53],"targets.":[54],"Although":[55],"numerous":[56],"computational":[57],"methods":[58,103,150],"are":[59,186],"developed":[60,114],"to":[61,153],"predict":[62,154],"cellular":[63],"communication,":[64],"most":[65,83],"them":[67],"heavily":[68],"require":[69],"R":[71],"Python":[73],"programming":[74],"knowledge":[75,138],"only":[77],"provide":[78],"incomplete":[79],"analysis.":[80],"In":[81,157],"addition,":[82,158],"tools":[84],"have":[85],"been":[86],"published":[87],"as":[88],"combination":[90],"one":[92,95],"resource":[93],"method,":[96],"but":[97],"in":[98],"principle,":[99],"different":[100],"combinations":[101,148],"resources":[105,139,152],"strongly":[106],"influence":[107],"predicted":[109],"intercellular":[110],"interactions.":[111],"Here":[112],"we":[113],"CellCom,":[115],"a":[116,161],"user-friendly":[117],"web":[118],"server":[119],"efficient":[121],"prediction,":[122],"visual":[123],"analysis,":[124],"evaluation":[126,176],"cell-cell":[128],"mediated":[130],"by":[131],"ligand-receptor":[132],"pairs.":[133],"CellCom":[134,159,190],"integrated":[135],"rich":[136],"prior":[137],"classic":[141],"prediction":[144,166],"methods,":[145],"supporting":[146],"user-defined":[147],"communication.":[156],"provided":[160],"visualization":[162],"pipeline":[163],"analyzing":[165],"results":[167],"from":[168],"five":[169],"perspectives":[170],"offered":[172],"integration":[174],"results,":[178],"all":[179],"output":[181],"files":[182],"high-quality":[184],"images":[185],"available":[187,192],"download.":[189],"at":[193],"https://www.csuligroup.com/CellCom.":[194]},"counts_by_year":[],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
