{"id":"https://openalex.org/W4405427246","doi":"https://doi.org/10.1145/3698587.3701348","title":"PepGPL: A Multi-Task Framework for Identifying Peptide-Protein Interactions and Corresponding Binding Residues","display_name":"PepGPL: A Multi-Task Framework for Identifying Peptide-Protein Interactions and Corresponding Binding Residues","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405427246","doi":"https://doi.org/10.1145/3698587.3701348"},"language":"en","primary_location":{"id":"doi:10.1145/3698587.3701348","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3698587.3701348","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060126743","display_name":"Ruikang Zhou","orcid":"https://orcid.org/0009-0000-9363-9134"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ruikang Zhou","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103090768","display_name":"Haochen Zhao","orcid":"https://orcid.org/0000-0002-3854-4682"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haochen Zhao","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053729346","display_name":"Jian Zhong","orcid":"https://orcid.org/0009-0007-0010-3949"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Zhong","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026877800","display_name":"Guihua Duan","orcid":"https://orcid.org/0000-0002-9406-6443"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guihua Duan","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5060126743"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":0.2744,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.6154176,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5730830430984497},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5693890452384949},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.5624935626983643},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.44271016120910645},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4050386846065521},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.29038113355636597},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14651653170585632},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1125650405883789},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.1065550148487091}],"concepts":[{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5730830430984497},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5693890452384949},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.5624935626983643},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.44271016120910645},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4050386846065521},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.29038113355636597},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14651653170585632},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1125650405883789},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.1065550148487091}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3698587.3701348","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3698587.3701348","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W38542969","https://openalex.org/W1544435011","https://openalex.org/W1768303176","https://openalex.org/W1976526581","https://openalex.org/W1992983658","https://openalex.org/W2006192061","https://openalex.org/W2033726949","https://openalex.org/W2065575443","https://openalex.org/W2096495474","https://openalex.org/W2158714788","https://openalex.org/W2724823461","https://openalex.org/W2757108520","https://openalex.org/W2767891136","https://openalex.org/W2774836764","https://openalex.org/W2806884808","https://openalex.org/W2874062053","https://openalex.org/W2957436444","https://openalex.org/W3019745511","https://openalex.org/W3177500196","https://openalex.org/W3199607358","https://openalex.org/W4200136078","https://openalex.org/W4281294164","https://openalex.org/W4281557145","https://openalex.org/W4283586679"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2899084033","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487"],"abstract_inverted_index":{"Identifying":[0],"Peptide-Protein":[1],"Interactions":[2],"(PepPIs)":[3],"and":[4,19,38,40,45,54,69,84,105,110,133,155],"the":[5,24,46,52,70,94],"specific":[6],"binding":[7,72,157],"residues":[8,107],"involved":[9],"in":[10],"these":[11],"interactions":[12,35],"is":[13,117],"crucial":[14],"for":[15,88,152],"understanding":[16],"protein":[17,53,136],"function":[18],"discovering":[20],"therapeutic":[21],"peptides.":[22,111],"Despite":[23],"development":[25],"of":[26,33],"various":[27],"computational":[28],"methods,":[29,79],"they":[30],"lack":[31],"consideration":[32],"local":[34,106],"between":[36,108],"proteins":[37,109],"peptides,":[39],"cannot":[41],"simultaneously":[42,66],"predict":[43,67],"PepPIs":[44,68,154],"corresponding":[47,71,156],"interaction":[48,86,99],"sites":[49],"on":[50,129],"both":[51,102],"pep-tide":[55],"sides.":[56],"Therefore,":[57],"we":[58,124],"develop":[59],"a":[60,149],"multi-task":[61],"framework,":[62],"named":[63],"PepGPL,":[64],"to":[65,76,96,119],"residues.":[73,158],"In":[74],"contrast":[75],"existing":[77],"state-of-the-art":[78],"PepGPL":[80,116],"integrates":[81],"rich":[82],"features":[83],"constructs":[85],"graphs":[87],"peptide-protein":[89],"pairs.":[90],"This":[91],"design":[92],"empowers":[93],"model":[95],"effectively":[97],"capture":[98],"information":[100],"spanning":[101],"global":[103],"sequences":[104],"Comparative":[112],"results":[113],"demonstrate":[114],"that":[115,144],"superior":[118],"previously":[120],"reported":[121],"models.":[122],"Additionally,":[123],"conduct":[125],"case":[126,139],"studies":[127,140],"focusing":[128],"parathyroid":[130,134],"hormone":[131],"analogs":[132],"hormone-related":[135],"analogs.":[137],"These":[138],"provide":[141],"compelling":[142],"evidence":[143],"our":[145],"method":[146],"serves":[147],"as":[148],"valuable":[150],"tool":[151],"identifying":[153]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-12-27T23:08:20.325037","created_date":"2025-10-10T00:00:00"}
