{"id":"https://openalex.org/W4405427445","doi":"https://doi.org/10.1145/3698587.3701338","title":"Com-DNB: A novel method for identifying critical states of complex biological processes and its parallelization","display_name":"Com-DNB: A novel method for identifying critical states of complex biological processes and its parallelization","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405427445","doi":"https://doi.org/10.1145/3698587.3701338"},"language":"en","primary_location":{"id":"doi:10.1145/3698587.3701338","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3698587.3701338","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107945656","display_name":"Letian Wang","orcid":"https://orcid.org/0009-0000-0640-301X"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Letian Wang","raw_affiliation_strings":["School of Medical Technology, Beijing Institute of Technology, Beijing China"],"affiliations":[{"raw_affiliation_string":"School of Medical Technology, Beijing Institute of Technology, Beijing China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103250486","display_name":"Yanbing Zhu","orcid":"https://orcid.org/0000-0002-9360-0632"},"institutions":[{"id":"https://openalex.org/I183519381","display_name":"Capital Medical University","ror":"https://ror.org/013xs5b60","country_code":"CN","type":"education","lineage":["https://openalex.org/I183519381"]},{"id":"https://openalex.org/I4210147433","display_name":"Beijing Friendship Hospital","ror":"https://ror.org/053qy4437","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210147433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanbing Zhu","raw_affiliation_strings":["Beijing Clinical Research Institute, Beijing Friendship Hospital, Capital Medical University, Beijing China"],"affiliations":[{"raw_affiliation_string":"Beijing Clinical Research Institute, Beijing Friendship Hospital, Capital Medical University, Beijing China","institution_ids":["https://openalex.org/I4210147433","https://openalex.org/I183519381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058683397","display_name":"Xiaohua Wan","orcid":"https://orcid.org/0000-0002-9340-878X"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaohua Wan","raw_affiliation_strings":["School of Medical Technology, Beijing Institute of Technology, Beijing China"],"affiliations":[{"raw_affiliation_string":"School of Medical Technology, Beijing Institute of Technology, Beijing China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113509343","display_name":"Y. Zhang","orcid":"https://orcid.org/0009-0009-9561-2889"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiming Zhang","raw_affiliation_strings":["School of Medical Technology, Beijing Institute of Technology, Beijing China"],"affiliations":[{"raw_affiliation_string":"School of Medical Technology, Beijing Institute of Technology, Beijing China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111708239","display_name":"Shuang Feng","orcid":"https://orcid.org/0000-0001-7715-0531"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuang Feng","raw_affiliation_strings":["School of Medical Technology, Beijing Institute of Technology, Beijing China"],"affiliations":[{"raw_affiliation_string":"School of Medical Technology, Beijing Institute of Technology, Beijing China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104269581","display_name":"Chang Li","orcid":"https://orcid.org/0009-0001-4681-6035"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chang Li","raw_affiliation_strings":["School of Medical Technology, Beijing Institute of Technology, Beijing China"],"affiliations":[{"raw_affiliation_string":"School of Medical Technology, Beijing Institute of Technology, Beijing China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100731978","display_name":"Fa Zhang","orcid":"https://orcid.org/0000-0002-2081-9369"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fa Zhang","raw_affiliation_strings":["School of Medical Technology, Beijing Institute of Technology, Beijing China"],"affiliations":[{"raw_affiliation_string":"School of Medical Technology, Beijing Institute of Technology, Beijing China","institution_ids":["https://openalex.org/I125839683"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100380066","display_name":"Bin Hu","orcid":"https://orcid.org/0000-0003-3514-5413"},"institutions":[{"id":"https://openalex.org/I125839683","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74","country_code":"CN","type":"education","lineage":["https://openalex.org/I125839683","https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Hu","raw_affiliation_strings":["School of Medical Technology, Beijing Institute of Technology, Beijing China"],"affiliations":[{"raw_affiliation_string":"School of Medical Technology, Beijing Institute of Technology, Beijing China","institution_ids":["https://openalex.org/I125839683"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5107945656"],"corresponding_institution_ids":["https://openalex.org/I125839683"],"apc_list":null,"apc_paid":null,"fwci":0.2339,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.59933967,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9706000089645386,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7097508907318115},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5416645407676697},{"id":"https://openalex.org/keywords/automatic-parallelization","display_name":"Automatic parallelization","score":0.4675435423851013},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18997222185134888}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7097508907318115},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5416645407676697},{"id":"https://openalex.org/C164833996","wikidata":"https://www.wikidata.org/wiki/Q2323839","display_name":"Automatic parallelization","level":3,"score":0.4675435423851013},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18997222185134888},{"id":"https://openalex.org/C169590947","wikidata":"https://www.wikidata.org/wiki/Q47506","display_name":"Compiler","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3698587.3701338","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3698587.3701338","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1998443306","https://openalex.org/W2035471593","https://openalex.org/W2038998835","https://openalex.org/W2111132036","https://openalex.org/W2508622936","https://openalex.org/W2570629027","https://openalex.org/W2733397209","https://openalex.org/W2780539753","https://openalex.org/W2896741302","https://openalex.org/W2907471989","https://openalex.org/W2994160326","https://openalex.org/W3020029071","https://openalex.org/W3036349022","https://openalex.org/W3101689851","https://openalex.org/W3161778279","https://openalex.org/W3200781500","https://openalex.org/W3202280027","https://openalex.org/W4224245553","https://openalex.org/W4225964782","https://openalex.org/W4281696767","https://openalex.org/W4294707570","https://openalex.org/W4385351684","https://openalex.org/W4388628847"],"related_works":["https://openalex.org/W2555203579","https://openalex.org/W1842571235","https://openalex.org/W2994999011","https://openalex.org/W3024114208","https://openalex.org/W1985416522","https://openalex.org/W1819272977","https://openalex.org/W2911340114","https://openalex.org/W2034886984","https://openalex.org/W4233032676","https://openalex.org/W2158244147"],"abstract_inverted_index":{"Identifying":[0],"critical":[1,5,47,131,160],"states":[2],"prior":[3],"to":[4,21,44,142],"transitions":[6],"in":[7,49,81,135,156],"complex":[8,51],"biological":[9,52],"processes":[10],"is":[11,71,126,140,152],"essential":[12],"for":[13],"disease":[14],"forecasting":[15],"and":[16,78,114,149],"early":[17],"interventional":[18],"therapy.":[19],"Due":[20],"the":[22,25,28,34,46,61,82,91,95,103,108,130,138,157],"complexity":[23],"of":[24,73,84,94,112,124,133,159],"underlying":[26],"mechanisms,":[27],"currently":[29],"proposed":[30],"methods":[31],"based":[32,64,101],"on":[33,65,102],"dynamic":[35],"network":[36],"biomarker":[37],"(DNB)":[38],"theory":[39],"cannot":[40],"be":[41],"well":[42],"used":[43],"identify":[45,143],"state":[48,132,161],"a":[50,153],"process":[53],"like":[54],"aging.":[55],"In":[56],"this":[57,87],"paper,":[58],"we":[59],"propose":[60],"com-DNB":[62,139],"method":[63],"single-sample":[66,144],"DNB":[67,76],"community":[68],"detection,":[69],"which":[70,151],"capable":[72],"identifying":[74],"adaptively-sized":[75],"communities":[77],"makes":[79],"improvements":[80],"quality":[83],"DNBs.":[85],"Meanwhile,":[86],"paper":[88],"substantially":[89],"improves":[90],"computational":[92],"efficiency":[93],"original":[96],"l-DNB":[97],"part":[98],"it":[99],"contains":[100],"parallel":[104],"strategy.":[105],"Finally,":[106],"using":[107],"gene":[109],"expression":[110],"data":[111],"PBMCs":[113],"classical":[115],"monocytes":[116],"from":[117],"130":[118],"healthy":[119],"human":[120],"donors,":[121],"61--65":[122],"years":[123],"age":[125],"successfully":[127],"identified":[128],"as":[129],"aging":[134],"men.":[136],"Therefore,":[137],"able":[141],"personalized":[145],"DNBs":[146],"more":[147],"efficiently":[148],"accurately,":[150],"significant":[154],"advance":[155],"field":[158],"identification.":[162]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
