{"id":"https://openalex.org/W2050823948","doi":"https://doi.org/10.1145/369133.369194","title":"A NMR-spectra-based scoring function for protein docking","display_name":"A NMR-spectra-based scoring function for protein docking","publication_year":2001,"publication_date":"2001-04-22","ids":{"openalex":"https://openalex.org/W2050823948","doi":"https://doi.org/10.1145/369133.369194","mag":"2050823948"},"language":"en","primary_location":{"id":"doi:10.1145/369133.369194","is_oa":false,"landing_page_url":"https://doi.org/10.1145/369133.369194","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the fifth annual international conference on Computational biology","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053621010","display_name":"Oliver Kohlbacher","orcid":"https://orcid.org/0000-0003-1739-4598"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"O. Kohlbacher","raw_affiliation_strings":["Max-Planck-Institut f\u00fcr Informatik, Stuhlsatzenhausweg 85, 66123 Saarbr\u00fccken, Gremany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck-Institut f\u00fcr Informatik, Stuhlsatzenhausweg 85, 66123 Saarbr\u00fccken, Gremany","institution_ids":["https://openalex.org/I4210109712"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069993204","display_name":"Andreas Burchardt","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"A. Burchardt","raw_affiliation_strings":["Max-Planck-Institut f\u00fcr Informatik, Stuhlsatzenhausweg 85, 66123 Saarbr\u00fccken, Gremany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck-Institut f\u00fcr Informatik, Stuhlsatzenhausweg 85, 66123 Saarbr\u00fccken, Gremany","institution_ids":["https://openalex.org/I4210109712"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106470392","display_name":"A. Moll","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"A. Moll","raw_affiliation_strings":["Max-Planck-Institut f\u00fcr Informatik, Stuhlsatzenhausweg 85, 66123 Saarbr\u00fccken, Gremany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck-Institut f\u00fcr Informatik, Stuhlsatzenhausweg 85, 66123 Saarbr\u00fccken, Gremany","institution_ids":["https://openalex.org/I4210109712"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015934308","display_name":"Andreas Hildebrandt","orcid":"https://orcid.org/0000-0003-2180-6516"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"A. Hildebrandt","raw_affiliation_strings":["Max-Planck-Institut f\u00fcr Informatik, Stuhlsatzenhausweg 85, 66123 Saarbr\u00fccken, Gremany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck-Institut f\u00fcr Informatik, Stuhlsatzenhausweg 85, 66123 Saarbr\u00fccken, Gremany","institution_ids":["https://openalex.org/I4210109712"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069695058","display_name":"Peter Bayer","orcid":"https://orcid.org/0000-0003-0435-7202"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"P. Bayer","raw_affiliation_strings":["Max-Planck-Institut f\u00fcr molokulare Physiologie, Otto-Hahn-Str. 11, 44227 Dartmund, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck-Institut f\u00fcr molokulare Physiologie, Otto-Hahn-Str. 11, 44227 Dartmund, Germany","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085594740","display_name":"Hans\u2010Peter Lenhof","orcid":"https://orcid.org/0000-0002-5820-9961"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"H.-P Lenhof","raw_affiliation_strings":["Max-Planck-Institut f\u00fcr Informatik, Stuhlsatzenhausweg 85, 66123 Saarbr\u00fccken, Gremany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck-Institut f\u00fcr Informatik, Stuhlsatzenhausweg 85, 66123 Saarbr\u00fccken, Gremany","institution_ids":["https://openalex.org/I4210109712"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.08921327,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"184","last_page":"192"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6101955771446228},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47310376167297363},{"id":"https://openalex.org/keywords/nuclear-magnetic-resonance","display_name":"Nuclear magnetic resonance","score":0.3256568908691406},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.23501646518707275},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.12217402458190918}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6101955771446228},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47310376167297363},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.3256568908691406},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.23501646518707275},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12217402458190918},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/369133.369194","is_oa":false,"landing_page_url":"https://doi.org/10.1145/369133.369194","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the fifth annual international conference on Computational biology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W4739531","https://openalex.org/W826299057","https://openalex.org/W1027865284","https://openalex.org/W1543171539","https://openalex.org/W1554152212","https://openalex.org/W1576403707","https://openalex.org/W1584189892","https://openalex.org/W1964167423","https://openalex.org/W1966041739","https://openalex.org/W1970119605","https://openalex.org/W1970379663","https://openalex.org/W1972728295","https://openalex.org/W1974977468","https://openalex.org/W1975602408","https://openalex.org/W1980359542","https://openalex.org/W1981508512","https://openalex.org/W1982819548","https://openalex.org/W1985570405","https://openalex.org/W1988012305","https://openalex.org/W1990806874","https://openalex.org/W1997814593","https://openalex.org/W2000383223","https://openalex.org/W2001535102","https://openalex.org/W2006404858","https://openalex.org/W2007967705","https://openalex.org/W2008852962","https://openalex.org/W2012519948","https://openalex.org/W2017739172","https://openalex.org/W2023940675","https://openalex.org/W2027529020","https://openalex.org/W2027638447","https://openalex.org/W2031553931","https://openalex.org/W2032397267","https://openalex.org/W2045550557","https://openalex.org/W2048436877","https://openalex.org/W2051531023","https://openalex.org/W2056034415","https://openalex.org/W2063223774","https://openalex.org/W2073082810","https://openalex.org/W2079049923","https://openalex.org/W2088762862","https://openalex.org/W2088807854","https://openalex.org/W2091477689","https://openalex.org/W2092544746","https://openalex.org/W2114779636","https://openalex.org/W2118116238","https://openalex.org/W2122199548","https://openalex.org/W2134145235","https://openalex.org/W2134801216","https://openalex.org/W2148672785","https://openalex.org/W2157967694","https://openalex.org/W2159580916","https://openalex.org/W2168366928","https://openalex.org/W2172114588","https://openalex.org/W2346370112","https://openalex.org/W2409347068","https://openalex.org/W4388242555","https://openalex.org/W6632498881","https://openalex.org/W6658359913"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"A":[0,27,101],"well":[1],"studied":[2],"problem":[3,16],"in":[4,207],"the":[5,12,36,39,51,67,90,93,97,110,146,150,157,165,192,195,208,221],"area":[6],"of":[7,38,57,70,74,89,96,100,109,156,198],"Computational":[8],"Molecular":[9],"Biology":[10],"is":[11],"so-called":[13],"Protein-Protein":[14],"Docking":[15],"(PPD)":[17],"that":[18,30],"can":[19,46],"be":[20,47],"formulated":[21],"as":[22],"follows:":[23],"Given":[24],"two":[25],"proteins":[26],"and":[28,54,102,121,144,213],"B":[29,103],"form":[31],"a":[32,87,115,128,135],"protein":[33,40,75,200],"complex,":[34],"compute":[35],"3D-structure":[37],"complex":[41,111,124,142,167],"AB.":[42,112],"Protein":[43],"docking":[44,58,129],"algorithms":[45],"used":[48,162],"to":[49,64,163,171],"study":[50],"driving":[52],"forces":[53],"reaction":[55],"mechanisms":[56],"processes.":[59],"They":[60],"are":[61,85,160,205,218],"also":[62],"able":[63],"speed":[65],"up":[66],"lenghty":[68],"process":[69],"experimental":[71,151],"structure":[72,143],"elucidation":[73],"complexes":[76,201],"by":[77,127],"proposing":[78],"potential":[79,123,166],"structures.":[80,168],"In":[81,169],"this":[82],"paper,":[83],"we":[84,180],"discussing":[86],"variant":[88],"PPD-problem":[91],"where":[92],"input":[94],"consists":[95],"tertiary":[98],"structures":[99,125,204],"plus":[104],"an":[105],"unassigned":[106],"1H-NMR":[107,137,215],"spectrum":[108,138,148],"We":[113,189],"present":[114],"new":[116],"scoring":[117,132],"function":[118,133],"for":[119,139],"evaluating":[120],"ranking":[122],"produced":[126],"algorithm.":[130],"The":[131,153],"computes":[134],"\u201ctheoretical\u201d":[136],"each":[140],"tentative":[141],"subtracts":[145],"calculated":[147],"from":[149,220],"spectrum.":[152],"absolute":[154],"areas":[155],"difference":[158],"spectra":[159],"then":[161],"rank":[164],"contrast":[170],"formerly":[172],"published":[173],"approaches":[174],"(e.g.":[175],"Morelli":[176],"et.":[177],"al.":[178],"[38])":[179],"do":[181],"not":[182],"use":[183],"distance":[184],"constraints":[185],"(intermolecular":[186],"NOE":[187],"constraints).":[188],"have":[190],"tested":[191],"approach":[193],"with":[194],"bound":[196],"conformations":[197],"four":[199],"whose":[202,214],"three-dimensional":[203],"stored":[206],"PDB":[209],"data":[210],"bank":[211],"[5]":[212],"shift":[216],"assignments":[217],"available":[219],"BMRB":[222],"database":[223],"(BioMagResBank":[224],"[47]).":[225]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
