{"id":"https://openalex.org/W4404611810","doi":"https://doi.org/10.1145/3678717.3691264","title":"Detecting and Visualizing Bond-Forming Convoys in Atomic and Molecular Trajectories","display_name":"Detecting and Visualizing Bond-Forming Convoys in Atomic and Molecular Trajectories","publication_year":2024,"publication_date":"2024-10-29","ids":{"openalex":"https://openalex.org/W4404611810","doi":"https://doi.org/10.1145/3678717.3691264"},"language":"en","primary_location":{"id":"doi:10.1145/3678717.3691264","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3678717.3691264","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 32nd ACM International Conference on Advances in Geographic Information Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1145/3678717.3691264","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043030485","display_name":"Md Hasan Anowar","orcid":"https://orcid.org/0000-0001-7697-474X"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Md Hasan Anowar","raw_affiliation_strings":["Iowa State University, Ames, Iowa, USA"],"raw_orcid":"https://orcid.org/0000-0001-7697-474X","affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, Iowa, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084612625","display_name":"Abdullah Shamail","orcid":"https://orcid.org/0000-0001-5312-2595"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abdullah Shamail","raw_affiliation_strings":["Iowa State University, Ames, Iowa, USA"],"raw_orcid":"https://orcid.org/0000-0001-5312-2595","affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, Iowa, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114753354","display_name":"Ayden J. Albertsen","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ayden J. Albertsen","raw_affiliation_strings":["Iowa State University, Ames, Iowa, USA"],"raw_orcid":"https://orcid.org/0009-0004-5045-2918","affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, Iowa, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Benjamin Hall","orcid":"https://orcid.org/0009-0003-9104-6169"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin Hall","raw_affiliation_strings":["Iowa State University, Ames, Iowa, USA"],"raw_orcid":"https://orcid.org/0009-0003-9104-6169","affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, Iowa, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114753355","display_name":"Timothy J. Thielen","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy J. Thielen","raw_affiliation_strings":["Iowa State University, Ames, Iowa, USA"],"raw_orcid":"https://orcid.org/0009-0000-3023-341X","affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, Iowa, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114753356","display_name":"Benjamin Riemersma","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin Riemersma","raw_affiliation_strings":["Iowa State University, Ames, Iowa, USA"],"raw_orcid":"https://orcid.org/0009-0000-2484-4951","affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, Iowa, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086447943","display_name":"Goce Trajcevski","orcid":"https://orcid.org/0000-0002-8839-6278"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Goce Trajcevski","raw_affiliation_strings":["Iowa State University, Ames, Iowa, USA"],"raw_orcid":"https://orcid.org/0000-0002-8839-6278","affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, Iowa, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.23480141,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"657","last_page":"660"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13297","display_name":"History and advancements in chemistry","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13297","display_name":"History and advancements in chemistry","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9731000065803528,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12016","display_name":"Web Data Mining and Analysis","score":0.9490000009536743,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.4403952360153198},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43382126092910767},{"id":"https://openalex.org/keywords/bond","display_name":"Bond","score":0.4126112759113312},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4100591540336609},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3298724293708801},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20435494184494019},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.08173289895057678}],"concepts":[{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.4403952360153198},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43382126092910767},{"id":"https://openalex.org/C69738904","wikidata":"https://www.wikidata.org/wiki/Q11693","display_name":"Bond","level":2,"score":0.4126112759113312},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4100591540336609},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3298724293708801},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20435494184494019},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.08173289895057678},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3678717.3691264","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3678717.3691264","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 32nd ACM International Conference on Advances in Geographic Information Systems","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3678717.3691264","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3678717.3691264","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 32nd ACM International Conference on Advances in Geographic Information Systems","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1487634308","https://openalex.org/W1934562893","https://openalex.org/W2033626772","https://openalex.org/W2086833975","https://openalex.org/W2093038664","https://openalex.org/W2120320296","https://openalex.org/W2148959739","https://openalex.org/W2560264526","https://openalex.org/W3002974707","https://openalex.org/W4293657308","https://openalex.org/W4322766152","https://openalex.org/W4400521276"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2899084033","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487"],"abstract_inverted_index":{"To":[0],"avoid":[1],"high":[2],"costs":[3],"and":[4,80,105],"to":[5,44,119],"provide":[6],"safety":[7],"during":[8,86],"exploratory":[9],"stages,":[10],"most":[11],"manufacturers":[12],"of":[13,17,29,34,49,59,82,89,131,137,146],"drugs":[14],"run":[15],"simulations":[16],"molecular":[18],"interactions.":[19,112],"Subsequently,":[20],"the":[21,27,32,60,78,87,117,121,147,154],"outputs":[22],"are":[23,64],"used":[24],"for":[25,76],"analyzing":[26],"movements":[28],"atoms":[30],"(in":[31],"context":[33],"multiple":[35],"molecules":[36],"that":[37,56,101,127],"they":[38,151],"belong":[39],"to),":[40],"with":[41],"a":[42,74,90,125,138,143],"goal":[43],"detect":[45],"whether":[46],"certain":[47,57,111],"events":[48,53],"interest":[50],"occur.":[51],"Such":[52],"typically":[54],"mean":[55],"properties":[58,109],"drug":[61],"under":[62],"development":[63],"satisfied":[65],"(or":[66],"not).":[67],"In":[68],"this":[69],"demo":[70],"paper,":[71],"we":[72],"describe":[73],"system":[75,115],"detecting":[77],"formation":[79],"persistence":[81],"Hydrogen":[83],"Bonds":[84],"(HBs)":[85],"evolution":[88],"given":[91],"chemical":[92],"compound,":[93],"based":[94],"on":[95],"simulation":[96,122],"data.":[97],"The":[98],"rationale":[99],"is":[100],"such":[102],"phenomena":[103],"(occurrence":[104],"duration)":[106],"indicate":[107],"desirable":[108],"throughout":[110],"Our":[113],"prototype":[114],"allows":[116],"users":[118],"analyze":[120],"datasets":[123],"in":[124],"manner":[126],"enables:":[128],"(1)":[129],"detection":[130],"persistent,":[132],"long-lasting":[133],"HBs;":[134],"(2)":[135],"generation":[136],"detailed":[139],"report;":[140],"(3)":[141],"providing":[142],"visual":[144],"representation":[145],"persistent":[148],"HBs":[149],"(if":[150],"occur":[152],"within":[153],"data":[155],"set).":[156]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
