{"id":"https://openalex.org/W4401409083","doi":"https://doi.org/10.1145/3673038.3673148","title":"PANDORA: A Parallel Dendrogram Construction Algorithm for Single Linkage Clustering on GPU","display_name":"PANDORA: A Parallel Dendrogram Construction Algorithm for Single Linkage Clustering on GPU","publication_year":2024,"publication_date":"2024-08-08","ids":{"openalex":"https://openalex.org/W4401409083","doi":"https://doi.org/10.1145/3673038.3673148"},"language":"en","primary_location":{"id":"doi:10.1145/3673038.3673148","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3673038.3673148","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3673038.3673148","source":null,"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 53rd International Conference on Parallel Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3673038.3673148","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048170299","display_name":"Piyush Sao","orcid":"https://orcid.org/0000-0002-9432-5855"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Piyush Sao","raw_affiliation_strings":["Oak Ridge National Laboratory (ORNL), United States of America"],"affiliations":[{"raw_affiliation_string":"Oak Ridge National Laboratory (ORNL), United States of America","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077631555","display_name":"Andrey Prokopenko","orcid":"https://orcid.org/0000-0003-3616-5504"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrey Prokopenko","raw_affiliation_strings":["Oak Ridge National Laboratory (ORNL), United States of America"],"affiliations":[{"raw_affiliation_string":"Oak Ridge National Laboratory (ORNL), United States of America","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037788490","display_name":"Damien Lebrun-Grandi\u00e9","orcid":"https://orcid.org/0000-0003-1952-7219"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Damien Lebrun-Grandie","raw_affiliation_strings":["Oak Ridge National Laboratory (ORNL), United States of America"],"affiliations":[{"raw_affiliation_string":"Oak Ridge National Laboratory (ORNL), United States of America","institution_ids":["https://openalex.org/I1289243028"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5048170299"],"corresponding_institution_ids":["https://openalex.org/I1289243028"],"apc_list":null,"apc_paid":null,"fwci":1.0067,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.80029019,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"908","last_page":"918"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dendrogram","display_name":"Dendrogram","score":0.9460402727127075},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7641299962997437},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.7567381858825684},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7056972980499268},{"id":"https://openalex.org/keywords/hierarchical-clustering-of-networks","display_name":"Hierarchical clustering of networks","score":0.6266511082649231},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.6195496916770935},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.48797982931137085},{"id":"https://openalex.org/keywords/linkage","display_name":"Linkage (software)","score":0.48009446263313293},{"id":"https://openalex.org/keywords/single-linkage-clustering","display_name":"Single-linkage clustering","score":0.46647247672080994},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.448886513710022},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.42288607358932495},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30872446298599243},{"id":"https://openalex.org/keywords/canopy-clustering-algorithm","display_name":"Canopy clustering algorithm","score":0.2320317029953003},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20776057243347168},{"id":"https://openalex.org/keywords/correlation-clustering","display_name":"Correlation clustering","score":0.18345487117767334},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.14493584632873535}],"concepts":[{"id":"https://openalex.org/C172312944","wikidata":"https://www.wikidata.org/wiki/Q1957903","display_name":"Dendrogram","level":4,"score":0.9460402727127075},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7641299962997437},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.7567381858825684},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7056972980499268},{"id":"https://openalex.org/C82261393","wikidata":"https://www.wikidata.org/wiki/Q17038699","display_name":"Hierarchical clustering of networks","level":5,"score":0.6266511082649231},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.6195496916770935},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.48797982931137085},{"id":"https://openalex.org/C31266012","wikidata":"https://www.wikidata.org/wiki/Q6554340","display_name":"Linkage (software)","level":3,"score":0.48009446263313293},{"id":"https://openalex.org/C22648726","wikidata":"https://www.wikidata.org/wiki/Q7523744","display_name":"Single-linkage clustering","level":5,"score":0.46647247672080994},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.448886513710022},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.42288607358932495},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30872446298599243},{"id":"https://openalex.org/C104047586","wikidata":"https://www.wikidata.org/wiki/Q5033439","display_name":"Canopy clustering algorithm","level":4,"score":0.2320317029953003},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20776057243347168},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.18345487117767334},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.14493584632873535},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1145/3673038.3673148","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3673038.3673148","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3673038.3673148","source":null,"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 53rd International Conference on Parallel Processing","raw_type":"proceedings-article"},{"id":"pmh:oai:osti.gov:2438688","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2438688","pdf_url":"https://www.osti.gov/servlets/purl/2438688","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1145/3673038.3673148","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3673038.3673148","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3673038.3673148","source":null,"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 53rd International Conference on Parallel Processing","raw_type":"proceedings-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Sustainable cities and communities","id":"https://metadata.un.org/sdg/11"}],"awards":[{"id":"https://openalex.org/G1489425746","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1719536385","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2042897603","display_name":null,"funder_award_id":"DE-AC05-00OR2272","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G2296932962","display_name":null,"funder_award_id":"DE-AC05-00OR227","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2366088775","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G3232922872","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G3299391273","display_name":null,"funder_award_id":"E-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3997560910","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G4327825534","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G4423657506","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G4694431782","display_name":null,"funder_award_id":"DE-AC05-00OR2272","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5001603810","display_name":null,"funder_award_id":"17-SC-20-S","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5726405315","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G6129992089","display_name":null,"funder_award_id":"DE-AC05-","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G6488227018","display_name":null,"funder_award_id":"DE-AC05-00OR227","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G675320460","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G6859237865","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6864165199","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G691578896","display_name":null,"funder_award_id":"DE-AC05-00OR2272","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7114708214","display_name":null,"funder_award_id":"DE-AC05-00OR2272","funder_id":"https://openalex.org/F4320338287","funder_display_name":"Oak Ridge National Laboratory"},{"id":"https://openalex.org/G7995982022","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8253304997","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8269158468","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8799952057","display_name":null,"funder_award_id":"DE-AC05-00OR22","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8813984943","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8943143067","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320316892","display_name":"UT-Battelle","ror":"https://ror.org/04nza6677"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320332369","display_name":"National Nuclear Security Administration","ror":"https://ror.org/03sk1we31"},{"id":"https://openalex.org/F4320338287","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4401409083.pdf"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W108464071","https://openalex.org/W1573878051","https://openalex.org/W1972969203","https://openalex.org/W1991912219","https://openalex.org/W2013444956","https://openalex.org/W2017927472","https://openalex.org/W2018359542","https://openalex.org/W2026297770","https://openalex.org/W2044146725","https://openalex.org/W2109334766","https://openalex.org/W2124032926","https://openalex.org/W2127284416","https://openalex.org/W2129976136","https://openalex.org/W2180566385","https://openalex.org/W2601243251","https://openalex.org/W2740025111","https://openalex.org/W2789683996","https://openalex.org/W2982437619","https://openalex.org/W2993839528","https://openalex.org/W2997591727","https://openalex.org/W3112912038","https://openalex.org/W3115858121","https://openalex.org/W3169714987","https://openalex.org/W3195293013","https://openalex.org/W4255306344","https://openalex.org/W4318899033"],"related_works":["https://openalex.org/W2488882714","https://openalex.org/W4312770795","https://openalex.org/W4292477917","https://openalex.org/W2357582197","https://openalex.org/W328064821","https://openalex.org/W2402452210","https://openalex.org/W3099216502","https://openalex.org/W1602287844","https://openalex.org/W2062059194","https://openalex.org/W2072104876"],"abstract_inverted_index":{"This":[0],"paper":[1],"introduces":[2],"Pandora,":[3],"a":[4,26,50],"parallel":[5,20],"algorithm":[6],"for":[7,14],"computing":[8,42],"dendrograms,":[9],"the":[10,45],"hierarchical":[11],"cluster":[12],"trees":[13],"single":[15],"linkage":[16],"clustering":[17],"(SLC).":[18],"Current":[19],"approaches":[21],"construct":[22],"dendrograms":[23,43],"by":[24],"partitioning":[25],"minimum":[27],"spanning":[28],"tree":[29],"and":[30],"removing":[31],"edges.":[32],"However,":[33],"they":[34],"struggle":[35],"with":[36],"skewed,":[37],"hard-to-parallelize":[38],"real-world":[39],"dendrograms.":[40],"Consequently,":[41],"is":[44],"sequential":[46],"bottleneck":[47],"in":[48],"HDBSCAN*[21],":[49],"popular":[51],"SLC":[52],"variant.":[53]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
