{"id":"https://openalex.org/W4410356877","doi":"https://doi.org/10.1145/3672608.3707933","title":"Tree-based biclustering of genomic time series","display_name":"Tree-based biclustering of genomic time series","publication_year":2025,"publication_date":"2025-03-31","ids":{"openalex":"https://openalex.org/W4410356877","doi":"https://doi.org/10.1145/3672608.3707933"},"language":"en","primary_location":{"id":"doi:10.1145/3672608.3707933","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3672608.3707933","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3672608.3707933","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 40th ACM/SIGAPP Symposium on Applied Computing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://dl.acm.org/doi/pdf/10.1145/3672608.3707933","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049817649","display_name":"Jes\u00fas S. Aguilar\u2013Ruiz","orcid":"https://orcid.org/0000-0002-2666-293X"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jes\u00fas S. Aguilar-Ruiz","raw_affiliation_strings":["School of Engineering, Pablo de Olavide University, Sevilla, Spain"],"affiliations":[{"raw_affiliation_string":"School of Engineering, Pablo de Olavide University, Sevilla, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036710822","display_name":"Ra\u00fal Gir\u00e1ldez","orcid":"https://orcid.org/0000-0002-4334-9830"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Raul Giraldez","raw_affiliation_strings":["Pablo de Olavide University, Sevilla, Spain"],"affiliations":[{"raw_affiliation_string":"Pablo de Olavide University, Sevilla, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004305062","display_name":"Roberto Ru\u00edz","orcid":"https://orcid.org/0000-0002-7453-705X"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Roberto Ruiz","raw_affiliation_strings":["Pablo de Olavide University, Sevilla, Spain"],"affiliations":[{"raw_affiliation_string":"Pablo de Olavide University, Sevilla, Spain","institution_ids":["https://openalex.org/I95013407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5049817649"],"corresponding_institution_ids":["https://openalex.org/I95013407"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09322402,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"169","last_page":"175"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12205","display_name":"Time Series Analysis and Forecasting","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biclustering","display_name":"Biclustering","score":0.7052528262138367},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6178231835365295},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6008669137954712},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.5080928802490234},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33284619450569153},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29868972301483154},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.26075607538223267},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1971733570098877},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11305826902389526},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.06416922807693481}],"concepts":[{"id":"https://openalex.org/C144817290","wikidata":"https://www.wikidata.org/wiki/Q2976575","display_name":"Biclustering","level":5,"score":0.7052528262138367},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6178231835365295},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6008669137954712},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.5080928802490234},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33284619450569153},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29868972301483154},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.26075607538223267},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1971733570098877},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11305826902389526},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.06416922807693481},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.0},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3672608.3707933","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3672608.3707933","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3672608.3707933","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 40th ACM/SIGAPP Symposium on Applied Computing","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1145/3672608.3707933","is_oa":true,"landing_page_url":"https://doi.org/10.1145/3672608.3707933","pdf_url":"https://dl.acm.org/doi/pdf/10.1145/3672608.3707933","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 40th ACM/SIGAPP Symposium on Applied Computing","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3429648993","display_name":null,"funder_award_id":"PID202","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4126322094","display_name":null,"funder_award_id":"01100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G661330594","display_name":null,"funder_award_id":"00110","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G6685425346","display_name":null,"funder_award_id":"0011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7084143925","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7266728691","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8260616629","display_name":null,"funder_award_id":"011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410356877.pdf","grobid_xml":"https://content.openalex.org/works/W4410356877.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W2006613013","https://openalex.org/W2034310798","https://openalex.org/W2036328877","https://openalex.org/W2037400115","https://openalex.org/W2054774141","https://openalex.org/W2058849889","https://openalex.org/W2066861015","https://openalex.org/W2079616103","https://openalex.org/W2116211027","https://openalex.org/W2119282901","https://openalex.org/W2136107412","https://openalex.org/W2141012957","https://openalex.org/W2142460132","https://openalex.org/W2144738674","https://openalex.org/W2153098260","https://openalex.org/W2320392928","https://openalex.org/W2913766202","https://openalex.org/W3146710118","https://openalex.org/W4210297234","https://openalex.org/W6601144205"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W1974340769","https://openalex.org/W2900595096","https://openalex.org/W4289277241","https://openalex.org/W2979322793","https://openalex.org/W2765801824","https://openalex.org/W2188068678","https://openalex.org/W1815970134"],"abstract_inverted_index":{"Biclustering":[0],"is":[1],"a":[2,56,74],"powerful":[3],"tool":[4],"for":[5,42,79],"analyzing":[6],"gene":[7,18,47,68,86],"expression":[8,48,69],"time":[9],"series,":[10],"providing":[11],"the":[12,43],"ability":[13],"to":[14,29,61,84,94],"simultaneously":[15],"explore":[16],"both":[17],"and":[19,91],"condition":[20],"dimensions.":[21],"Unlike":[22],"traditional":[23],"clustering":[24],"methods,":[25],"which":[26],"are":[27],"limited":[28],"one":[30],"dimension,":[31],"biclustering":[32],"uncovers":[33],"local":[34],"patterns":[35],"of":[36,45],"co-expression,":[37],"making":[38],"it":[39],"particularly":[40],"well-suited":[41],"analysis":[44],"dynamic":[46],"data.":[49,71],"In":[50],"this":[51],"paper,":[52],"we":[53],"introduce":[54],"BicTree,":[55],"novel":[57],"tree-based":[58],"algorithm":[59],"designed":[60],"efficiently":[62],"identify":[63,95],"temporally":[64],"coherent":[65],"biclusters":[66],"in":[67],"time-series":[70],"BicTree":[72],"employs":[73],"three-step":[75],"process:":[76],"Plaid":[77],"Filtering":[78],"feature":[80],"elimination,":[81],"Tree":[82],"Extension":[83],"partition":[85],"sets":[87],"based":[88],"on":[89],"correlation,":[90],"Bicluster":[92],"Extraction":[93],"significant":[96],"patterns.":[97]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
