{"id":"https://openalex.org/W4400439772","doi":"https://doi.org/10.1145/3664934.3664943","title":"Adopting MLU for Geneformer Model","display_name":"Adopting MLU for Geneformer Model","publication_year":2024,"publication_date":"2024-04-12","ids":{"openalex":"https://openalex.org/W4400439772","doi":"https://doi.org/10.1145/3664934.3664943"},"language":"en","primary_location":{"id":"doi:10.1145/3664934.3664943","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3664934.3664943","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2024 9th International Conference on Information and Education Innovations","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100279800","display_name":"Zhaoyong Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaoyong Yu","raw_affiliation_strings":["Faculty of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), China"],"raw_orcid":"https://orcid.org/0009-0000-5813-7462","affiliations":[{"raw_affiliation_string":"Faculty of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ying Yang","orcid":"https://orcid.org/0009-0004-6249-7152"},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Yang","raw_affiliation_strings":["Faculty of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), China"],"raw_orcid":"https://orcid.org/0009-0004-6249-7152","affiliations":[{"raw_affiliation_string":"Faculty of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100279801","display_name":"Yonggang Luo","orcid":"https://orcid.org/0000-0002-8572-335X"},"institutions":[{"id":"https://openalex.org/I113940042","display_name":"Shanghai University","ror":"https://ror.org/006teas31","country_code":"CN","type":"education","lineage":["https://openalex.org/I113940042"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yonggang Luo","raw_affiliation_strings":["Department of Library, Information &amp; Archives , Shanghai University, China and \rDepartment of Medical Instruments, Shanghai University of Medicine &amp; Health Sciences, China"],"raw_orcid":"https://orcid.org/0000-0002-8572-335X","affiliations":[{"raw_affiliation_string":"Department of Library, Information &amp; Archives , Shanghai University, China and \rDepartment of Medical Instruments, Shanghai University of Medicine &amp; Health Sciences, China","institution_ids":["https://openalex.org/I113940042"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.9124,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.84634485,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"37","last_page":"43"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9728000164031982,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9728000164031982,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9409999847412109,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9132999777793884,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6024423837661743}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6024423837661743}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1145/3664934.3664943","is_oa":false,"landing_page_url":"https://doi.org/10.1145/3664934.3664943","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2024 9th International Conference on Information and Education Innovations","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.44999998807907104}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W2970971581","https://openalex.org/W3081168214","https://openalex.org/W4322768301","https://openalex.org/W4378838672","https://openalex.org/W4389982793"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032"],"abstract_inverted_index":{"This":[0],"study":[1,166],"focuses":[2],"on":[3,13,99],"adapting":[4,172],"and":[5,40,56,68,77,132,145,160,173,188],"enhancing":[6,142],"the":[7,10,14,21,35,54,61,73,82,86,89,96,100,119,175,183],"performance":[8,106,144],"of":[9,85,95,118],"Geneformer":[11,36,97,176],"algorithm":[12,143,177],"Cambricon":[15],"MLU290-M5":[16],"smart":[17,179],"accelerator":[18,180],"card,":[19],"addressing":[20],"limitations":[22],"posed":[23],"by":[24],"Nvidia":[25],"CUDA":[26],"dependency":[27],"in":[28,44,109,127,140,155,192],"biocomputing.":[29,193],"The":[30,51],"aim":[31],"is":[32],"to":[33,72,171],"broaden":[34],"model's":[37],"application":[38],"scope":[39],"elevate":[41],"scientific":[42,190],"productivity":[43,191],"fields":[45],"like":[46],"network":[47],"biology":[48],"via":[49],"retraining.":[50],"research":[52,90],"details":[53],"hardware":[55,122,146,158],"software":[57,65,162],"platform":[58],"configurations,":[59,111],"including":[60],"MLU290-M5's":[62],"technical":[63],"specifications,":[64],"stack":[66],"architecture,":[67],"adaptive":[69],"modifications":[70],"made":[71],"PyTorch":[74],"source":[75],"code":[76],"transformers":[78],"library.":[79],"By":[80],"leveraging":[81],"unique":[83],"characteristics":[84],"MLU":[87,120,157],"hardware,":[88],"team":[91],"achieved":[92,124],"efficient":[93],"operation":[94],"model":[98,130],"MLU290-M5.":[101],"Experimental":[102],"results":[103],"demonstrate":[104],"significant":[105],"improvements,":[107],"particularly":[108],"multi-card":[110],"with":[112],"linear":[113],"scaling":[114],"achieved.":[115],"Full":[116],"utilization":[117,147],"290":[121],"was":[123],"through":[125],"optimizations":[126],"data":[128],"loading,":[129],"parallelism":[131],"communication":[133],"protocols.":[134],"Despite":[135],"these":[136],"achievements,":[137],"challenges":[138],"remain":[139],"further":[141],"efficiency,":[148],"providing":[149],"opportunities":[150],"for":[151,178,185],"future":[152],"research,":[153],"especially":[154],"improving":[156],"drivers":[159],"related":[161],"packages.":[163],"Overall,":[164],"this":[165],"offers":[167],"an":[168],"innovative":[169],"approach":[170],"optimizing":[174],"cards,":[181],"paving":[182],"way":[184],"broader":[186],"applications":[187],"improved":[189]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
